Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq33510 129 8e-25 seq37278 89.7 7e-13 >seq33510 Length=29102 Score = 129 bits (142), Expect = 8e-25 Identities = 161/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || | ||| || || ||||| || || ||||||| ||||| || | Sbjct 26571 CCTCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 26630 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || || |||||||| ||||| || || |||||||| || || || ||||| | Sbjct 26631 TGAGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGG 26690 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | || | | || | ||| || | | || || ||||||||| | ||||| || | Sbjct 26691 CTACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGG 26750 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||||||| || || ||||| || ||||| || Sbjct 26751 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAA 26790 >seq37278 Length=37914 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/148 (74%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 || ||||| | |||||||||||| || ||||| ||||| ||||| ||||| || |||| | Sbjct 6740 CGTTTTTTCAACCAAAATATGGCTGCGAAAGACCCAGAGAAGAAAATGCCCTCCACTGAT 6681 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAACTTGTATC---ATTATGTATCCACTTCTGTGCC 39808 |||||||| || || ||||| || | || || | | ||||||||| |||| Sbjct 6680 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 6621 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCA 39836 || || || || || || ||||| |||| Sbjct 6620 CAGTCTGCCTTTTTTTTGACACATGGCA 6593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685770188559480