Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq112321 107 2e-18 seq60492 100 2e-16 seq9979 100 2e-16 seq45117 89.7 4e-13 >seq112321 Length=3025 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTA 27115 ||||| || || ||||||||| | ||||| | |||| ||||| |||||||| ||| | Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTC-CGTCCTCGAGTTGTTTACCAGCGAA 2967 Query 27116 AATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGT 27175 |||||||||||| || || || || | ||| || || || ||| ||| ||| | | Sbjct 2966 AATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATT 2907 Query 27176 TTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCAC 27235 || | ||||| | | ||| || || || || || | ||||| ||||||||||| || Sbjct 2906 CTCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 2847 Query 27236 AAAGATTTGCATA 27248 |||||| |||||| Sbjct 2846 AAAGATCTGCATA 2834 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | ||||| | |||| || || |||||||| Sbjct 2803 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTC-CGTCCTCTAGTTGTTTACC 2745 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 2744 AGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTT 2685 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| ||||| || || || | ||||| ||||| || Sbjct 2684 GACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGTGT 2625 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||| Sbjct 2624 TTTGACAAAGATCTGCAT 2607 >seq60492 Length=3139 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | | ||| | |||| || || |||||||| Sbjct 1253 GTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTC-CGTCCTCTAGTTGTTTACC 1195 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | |||||||| || ||||| || || | |||||| || || ||| ||| ||| Sbjct 1194 AGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCCTGGATTTTGGATTT 1135 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || || || || || | ||||| |||||||| Sbjct 1134 GACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 1075 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 1074 TTTGACAAAGATCTGCATA 1056 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | | ||| | |||| ||||| || ||||| Sbjct 1481 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTC-CGTCCTCGAGTTGCTTACC 1423 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || |||||||| ||||| || || | |||||| || || ||| ||| ||| Sbjct 1422 AGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATTTTGGATTT 1363 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || || || || || | ||||| |||||||| Sbjct 1362 GACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 1303 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 1302 TTTGACAAAGATCTGCATA 1284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | | | |||| ||||| || ||||| Sbjct 338 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTGCTTACCA 279 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| ||||| || || | ||| || || || ||| ||| ||| Sbjct 278 GCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 219 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||| || || || || || | ||||| ||||||||| Sbjct 218 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 159 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 158 TTGACAAAGATCTGCATA 141 >seq9979 Length=2718 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | ||||| | |||| || || |||||||| Sbjct 2381 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTC-CGTCCTCTAGTTGTTTACC 2439 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | ||||||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 2440 AGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTT 2499 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| ||||| || || || | ||||| |||||||| Sbjct 2500 GACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGTCAGAGT 2559 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 2560 TTTGACAAAGATCTGCATA 2578 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | | ||| | |||| |||||||| || || Sbjct 1925 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTC-CGTCCTCGAGCTGCTTTCC 1983 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || |||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 1984 AGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTT 2043 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| || || || || || | ||||| |||||||| Sbjct 2044 GACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGT 2103 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 2104 TTTGACAAAGATCTGCATA 2122 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGC-TCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||| || || ||||||||| | ||||| | | || ||||| || || || Sbjct 2153 GTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTC-CATCCTCGAGTTGCTTTCC 2211 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || |||||||| || || || || | ||| || || || ||| ||| ||| Sbjct 2212 AGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTTGGATTT 2271 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| ||||| || || || | ||||| |||||||| Sbjct 2272 GACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGTCAGAGT 2331 Query 27230 TTTCACAAAGATTTGCATA 27248 ||| |||||||| |||||| Sbjct 2332 TTTGACAAAGATCTGCATA 2350 >seq45117 Length=16876 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 || ||||| | |||| |||| | | || || |||||||||||||| || | || ||| Sbjct 6212 TCATCTTCTAACTGTCTACCTGTAAATATAAGCCGCTGTTGATCCGGAGGAATTCCTTCT 6153 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 || || ||||| ||| | | |||| | || |||| | ||||||||| |||| | Sbjct 6152 TTGTCTTGAATCTTAGATTTTACGTTTTCAATGGTATCTGACGGTTCAACTTCAAGAGAT 6093 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || || || |||||||| || ||||||||| Sbjct 6092 ATTGTTTTACCAGTAAGTGTTTTCACTAAAATTTGCATA 6054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424247643198984