Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq22802 120 4e-22 seq73127 93.3 5e-14 >seq22802 Length=4402 Score = 120 bits (132), Expect = 4e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||||| ||| |||||||| | |||| | ||| || || || | ||||| ||| Sbjct 3777 GTGTACTCTACAATCTCTGTACAGAGGTTGCTGCACTTGATTGTACCAAGGTTCTTCTGG 3836 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| |||| || |||||||||||||||||||| ||||| || |||||||| ||| Sbjct 3837 TTGCTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTAAGGCGTTCCAGTCTCCGTTTGT 3896 Query 111398 GATTTGAGAAT 111408 | || ||||| Sbjct 3897 GCTTCCAGAAT 3907 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | ||||| || || | | ||||||| || |||| ||| || Sbjct 1071 TCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGATTCATTGTTTCCCAGGATCTG 1130 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 || |||||||||||||||||||| || | || ||||||||||| || || Sbjct 1131 GGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGCAGGCC 1181 >seq73127 Length=3785 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| ||||||||| | ||||| || || | | ||||||| || |||| ||| || Sbjct 2503 TCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGATTCATTGTTTCCCAGGATCTG 2562 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACC 110808 || |||||||||||||||||||| || | || ||||||||||| || || Sbjct 2563 GGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTGTTACGCAGGCC 2613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626990982007200