Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq60492 131 1e-25 seq9979 131 1e-25 seq112321 123 2e-23 seq8964 100 2e-16 seq45117 95.1 1e-14 seq14839 84.2 2e-11 >seq60492 Length=3139 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 202 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATCAG 261 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | || ||| | ||| | ||||| |||||| Sbjct 262 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAAC 321 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | || | ||| | || ||||| || Sbjct 322 ATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGGTAT 371 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 1057 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1116 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| || || || ||||| ||||| Sbjct 1117 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCACCAGATCAG 1176 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||| | || | ||| || |||||| | || ||| | || |||| ||||| ||||| Sbjct 1177 CAACGTCTCATCTTCGCTGGTAAACAACTAGAGGAC-GGAAGAACGTTATCCGACTACAA 1235 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| || | ||| | || | ||| | || ||||| || Sbjct 1236 CATCCAGAAAGAGTCAACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTAT 1286 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| || || || || || ||||| Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 1404 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | || || || ||| | || ||| | || |||| ||||| ||||| Sbjct 1405 CAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGAC-GGAAGAACGTTATCCGACTACAA 1463 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || || ||||| || | ||| | ||| | ||| | || ||||| Sbjct 1464 CATCCAGAAAGAGTCCACACTCCATCTTGTTCTTCGTCTCCGTGGTGG 1511 >seq9979 Length=2718 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || |||||||| ||||| Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| ||||| || ||||| || || Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || |||||| | || ||| | || | ||||| |||||| Sbjct 2457 CAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAAC 2398 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | || | ||| | || ||||| || Sbjct 2397 ATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGGTAT 2348 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| ||||| || || || || || Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2002 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | || || || || | || ||| | || |||| ||||| ||||| Sbjct 2001 CAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGAC-GGAAGAACGTTATCCGACTACAA 1943 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || || ||||| || | ||| | || | ||| | || ||||| Sbjct 1942 CATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGG 1895 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || || ||||| ||||| Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| || ||||| ||||| || || || || || Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGACCAG 2230 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || ||| | || || | || | ||||| |||||| Sbjct 2229 CAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAAC 2170 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | ||| | || | ||| | || ||||| || Sbjct 2169 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTAT 2120 >seq112321 Length=3025 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||||||||| |||||| | || || ||||| || ||||| Sbjct 2835 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2894 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| ||||| || ||||| ||||| || ||||| || || Sbjct 2895 GACACCATTGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 2954 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || |||||| | || ||| | || | ||||| |||||| Sbjct 2955 CAGCGTCTCATTTTCGCTGGTAAACAACTCGAGGACGGAAGAACATTATCCGACTACAAC 3014 Query 27168 ATTCAAAAGGA 27178 || || || || Sbjct 3015 ATCCAGAAAGA 3025 >seq8964 Length=41004 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||| ||||| | || || || | || ||||| ||||| ||||| || Sbjct 1384 ATGCAAATTATTGTGAAAACACGTACTGGTAAAACAATAACTCTGGAAGTTGAACCATCA 1443 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || ||||| | || ||| || ||||||||||| ||||| || || || |||||| Sbjct 1444 GATTCCATTGAAAACGTAAAATCTAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAA 1503 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| |||| || || ||||| || ||| | | || |||| || || || Sbjct 1504 CAGCGGCCTATATTTGCAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGACTATAAT 1563 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| |||||| ||||| ||| | || || || Sbjct 1564 ATTCAGAAGGAGAGCACCTTGCATCTTGTCTTACG 1598 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || ||||| ||||| || || || || | || |||| ||||| |||||||| Sbjct 632 ATGAAAATTTTTGTGAAAACACTAACTGGTAAAACAATACCTCTGGAAGTTGAACCGTCA 691 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || |||||||||||| |||| || || || |||||| Sbjct 692 GATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAAAAGGAATTCCTCCTGATCAA 751 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAA 27140 ||||| | || | || || |||||||| ||| Sbjct 752 CAGCGGCTTATCTTTGCAGGTAAACAATTAGAA 784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || ||||| || || | ||| ||||| || ||||| Sbjct 22428 ATGCAAATTTTTGTGAAAACACTTACCGGTAAAATAATAATTCTGGAAGTTGATCCGTCA 22487 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| || |||||| |||||||||||||| ||||| | || || |||| | Sbjct 22488 GATACCATTGATATAGTCAAATCTAAAATTCAAGACAAGGAAGGAACTCCTCCTGATCGA 22547 Query 27108 CAG 27110 ||| Sbjct 22548 CAG 22550 >seq45117 Length=16876 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || || | || |||||||||| |||||||| Sbjct 6055 ATGCAAATTTTAGTGAAAACACTTACTGGTAAAACAATATCTCTTGAAGTTGAACCGTCA 6114 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || ||||||||||||||||| || || || |||||| Sbjct 6115 GATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 6174 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 ||||| | |||| | || | ||| || ||||| Sbjct 6175 CAGCGGCTTATATTTACAGGTAGACAGTTAGAAGA 6209 >seq14839 Length=24484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 135649 AGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTT 135708 |||||| ||||||||||| ||||| | || || ||||| ||| |||| | | || || Sbjct 2824 AGGTTGCATGTGGTCTATCTGCGGAATCCATGACCAAGGCTGGGCGGAGAGAGACGTCTT 2883 Query 135709 TGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGTA 135768 ||| ||| |||| || |||||||| || || || | ||||| ||| |||| |||| | Sbjct 2884 TGGGAAGGTTCGTTACATGAACTACGAAGGATGCAAGAGAAAGTTTGATGTGGATTTATT 2943 Query 135769 CGTGAG 135774 ||||| Sbjct 2944 TGTGAG 2949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434197484696640