Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9979 87.8 1e-12 seq60492 84.2 2e-11 >seq9979 Length=2718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| ||||| || || || |||| || ||| | Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 2517 GACACCATCGAGAAT--GTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACC 2460 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || |||||| | || |||| | | | || ||||| |||| Sbjct 2459 AGCAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACA 2400 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| |||| | ||| | || | ||| | ||||| || Sbjct 2399 ACATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGG 2351 >seq60492 Length=3139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| ||||| || || || |||| || ||| | Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| ||||| ||||| |||||| |||| || | Sbjct 202 GACACCATCGAGAAT--GTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGATC 259 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || ||| | || |||| | | | || ||||| |||| Sbjct 260 AGCAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACA 319 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| |||| | ||| | || | ||| | ||||| || Sbjct 320 ACATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGG 368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355287273760689