Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9979 102 7e-17 seq60492 98.7 9e-16 seq112321 95.1 1e-14 seq120249 82.4 7e-11 >seq9979 Length=2718 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | |||| | |||| || ||||| Sbjct 1918 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTG 1977 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||||||||||||||| | ||| | | || |||||| |||||| Sbjct 1978 CTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 2037 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 2038 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 2097 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 2098 CAGAGTTTTGACAAAGATCTGCAT 2121 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | ||||| | | || || || || Sbjct 2146 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCCTCGAGTTG 2205 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| ||||||||||||||||| | ||| | | || |||||| |||||| Sbjct 2206 CTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 2265 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 2266 GGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGT 2325 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 2326 CAGAGTTTTGACAAAGATCTGCAT 2349 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | ||||| | |||| || || || Sbjct 2374 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTG 2433 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || ||||| || |||||||||||||| | || | | || |||||| |||||| Sbjct 2434 TTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTT 2493 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 2494 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACTTCAAGGGTGATGGTCTTGCCAGT 2553 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 2554 CAGAGTTTTGACAAAGATCTGCAT 2577 >seq60492 Length=3139 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | |||| | |||| || || || Sbjct 1488 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGTTG 1429 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| |||||||||||||| || | ||| | | ||| |||||| |||||| Sbjct 1428 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATTTT 1369 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 1368 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 1309 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 1308 CAGAGTTTTGACAAAGATCTGCAT 1285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | || | | |||| || || || Sbjct 345 ATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCGAGTTG 286 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| |||||||||||||| || | || | | || |||||| |||||| Sbjct 285 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGGATTTT 226 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 225 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 166 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 165 CAGAGTTTTGACAAAGATCTGCAT 142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | || | | | || || || || Sbjct 573 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCGAGTTG 514 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || ||||| |||||||||||||| || | ||| | | || |||||| |||||| Sbjct 513 CTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATTTT 454 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 453 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 394 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||| |||||||| ||||| Sbjct 393 CAGGGTTTTGACAAAGATCTGCAT 370 >seq112321 Length=3025 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||| || || || || |||| | ||||| | |||| || || || Sbjct 2810 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTG 2751 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || |||||||||||||| | || | | || |||||| |||||| Sbjct 2750 TTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTT 2691 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| || | | || || || | || || || | ||||| | || || || Sbjct 2690 GGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTCTTGCCAGT 2631 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| ||||| |||||||| ||||| || Sbjct 2630 CAGTGTTTTGACAAAGATCTGCATGTT 2604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || || |||| | ||||| | |||| || || ||||| || || || Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | | || |||||| |||||| ||||| || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | || || || | ||||| | || || ||||| ||||| ||| Sbjct 2905 TCAATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACA 2846 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 2845 AAGATCTGCAT 2835 >seq120249 Length=1491 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| |||||| |||||| || || || || || | || |||| | | || ||| Sbjct 99 ACCAGATGGAGCGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCA 40 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 || |||||||||||||| ||||||||||| ||||| Sbjct 39 AGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428851390818191