Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq112321 120 2e-22 seq9979 116 2e-21 seq60492 114 9e-21 seq45117 82.4 5e-11 >seq112321 Length=3025 Score = 120 bits (132), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||| || || || || || ||||| |||||||| || | Sbjct 2604 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTCGAAGTAGAACCT 2663 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| Sbjct 2664 AGTGACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCACCAGA 2722 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || || || |||||||| || |||| | | || ||| ||| || Sbjct 2723 CCAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTA 2782 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || |||||||||||| | ||| Sbjct 2783 CAACATCCAGAAAGAGTCCACACTCCAT 2810 >seq9979 Length=2718 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || ||||| || | | Sbjct 2577 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCAAGT 2518 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| || Sbjct 2517 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCACCAGACCA 2459 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || |||||||| || |||| | | || ||| ||| ||||| Sbjct 2458 GCAGCGTCTCATCTTTGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTACAA 2399 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 2398 CATCCAGAAAGAGTCCAC 2381 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| |||||||| || | | Sbjct 2349 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTCGAAGTAGAACCTAGT 2290 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| || Sbjct 2289 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCCCCAGACCA 2231 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||||| || || | | | || ||| ||| ||||| Sbjct 2230 GCAGCGTCTTATCTTTGCTGGAAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAA 2171 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||||||| | ||| Sbjct 2170 CATCCAGAAAGAGTCCACACTCCAT 2146 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 2121 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 2062 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| || Sbjct 2061 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCCCCAGACCA 2003 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || || || |||| | | || ||| ||| ||||| Sbjct 2002 GCAGCGTCTTATCTTTGCTGGAAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAA 1943 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||||||| | ||| Sbjct 1942 CATCCAGAAAGAGTCCACACTCCAT 1918 >seq60492 Length=3139 Score = 114 bits (126), Expect = 9e-21 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || || || ||||| || || || || | | Sbjct 370 ATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 429 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || |||||||| Sbjct 430 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCCCCAGATCA 488 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||||| || || | | | || ||| ||| ||||| Sbjct 489 GCAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGTTATCCGACTACAA 548 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||||||| | ||| Sbjct 549 CATCCAGAAAGAGTCCACACTCCAT 573 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 1285 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 1344 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| || ||| | || |||||||| Sbjct 1345 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAGGGTATTCCCCCAGATCA 1403 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||||| || |||| | | || ||| ||| ||||| Sbjct 1404 GCAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGAACGTTATCCGACTACAA 1463 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||||||| | ||| | ||| Sbjct 1464 CATCCAGAAAGAGTCCACACTCCATCTTGTT 1494 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 142 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 201 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || |||||||| Sbjct 202 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCACCAGATCA 260 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||||| || |||| | | || ||| ||| ||||| Sbjct 261 GCAGCGTCTTATCTTTGCTGGTAAGCAACTCGAGGACGGAAGGACGTTATCCGACTACAA 320 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 321 CATCCAGAAAGAGTCCAC 338 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || || || || ||||| || || || || | | Sbjct 829 ATGCAGATCTTTGTCAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 888 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| |||||| | || ||||| || Sbjct 889 GACACCATCGAGAATGTCAAATCCAAAA-TCCAGGACAAGGAAGGTATTCCACCAGACCA 947 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || ||||| || || | | | || ||| ||| ||||| Sbjct 948 ACAGCGGCTCATCTTTGCTGGTAAGCAACTCGAGGATGGAAGAACATTATCCGACTACAA 1007 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || |||||||||||| | ||| Sbjct 1008 CATCCAGAAAGAGTCCACACTCCAT 1032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || |||||||| |||||| | || || || || |||||||| || Sbjct 7 GACAAGGAAGGTATTCCACCAGATCAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAG 66 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||| | | || ||| ||| |||||||| || |||||||||||| | ||| Sbjct 67 GACGGAAGAACGTTATCCGACTACAACATCCAGAAAGAGTCCACACTCCAT 117 >seq45117 Length=16876 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| || || || ||||| || |||| |||||||| | | Sbjct 6055 ATGCAAATTTTAGTGAAAACACTTACTGGTAAAACAATATCTCTTGAAGTTGAACCGTCA 6114 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || || |||||| Sbjct 6115 GATACCATTGAAAACGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 6174 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGA 23768 ||||| | |||||| | || | ||| | ||||| || Sbjct 6175 CAGCGGCTTATATTTACAGGTAGACAGTTAGAAGATGA 6212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337463326524356