Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq37278 118 9e-22 seq33510 82.4 7e-11 >seq37278 Length=37914 Score = 118 bits (130), Expect = 9e-22 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || ||||| |||||||| |||||||||||||||||||| || || |||||||| | || | Sbjct 4977 TCCATAGCTATCTGAAAGCCGTAAAAGCATCTAGCTTCCGTAACCTGAACTTCCTGACTA 4918 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 ||||| || || | |||||| || || || || || ||||| ||||| || || | || Sbjct 4917 AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAATG 4858 Query 4983 TGAGATATAAAGT 4995 |||||||| |||| Sbjct 4857 TGAGATATGAAGT 4845 >seq33510 Length=29102 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 || ||||| || ||||||||||||||||| || || || | |||||| | ||||| | Sbjct 27853 TTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTGC 27912 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 || || | || || || | ||||| || |||||| | | ||| ||||| || Sbjct 27913 TGCTCTTGCGGTTTCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTTCCTCG 27972 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACT 5112 | ||||| || || ||||| || || |||||||| ||| || || |||||| Sbjct 27973 GCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACT 28027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426359424723131