Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq33510 125 1e-23 seq23025 93.3 6e-14 seq22802 93.3 6e-14 seq73127 89.7 7e-13 >seq33510 Length=29102 Score = 125 bits (138), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| || || || | ||| || || ||||| || || ||||||| ||||||||| ||| Sbjct 26573 TCATCCCTGCTGATGAGTTCATTGGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 26632 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || ||||| || || ||||| || || || ||||| || || || ||||| || Sbjct 26633 AGCCAGAAGATTGCAGCAAATGATCCCGAGAAAAAGATGCCCTCGACCGCGGCAAAGGCT 26692 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 | | || | ||| |||||| | ||||| |||||| | ||||| || ||| Sbjct 26693 ACCACGCGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCGGCC 26752 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||||||||||| || || ||||| || ||||| || Sbjct 26753 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCATTGAA 26790 Score = 86.0 bits (94), Expect = 9e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||||||||||||| || | ||||| || ||||| |||||||| |||| ||| || || Sbjct 25481 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTCGTTTTGCCCTCCAGTGAAATGTT 25540 Query 47909 TTCCATAAAATCAAATGGATTA 47930 ||||| || |||||||||||| Sbjct 25541 CTCCATGAAGTCAAATGGATTA 25562 >seq23025 Length=8248 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGA 78800 |||| || |||||| ||| |||||||||| || ||||| ||||||||||| || |||| Sbjct 3896 CACTGAA-AGTTTTCTTGGTTTCCTTGTGCAGGTTAGAAACAGCTATTCTGGCTGCTAAG 3838 Query 78801 ATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCT 78860 || ||||| || ||||| | || || || ||||| | || ||||| || |||| Sbjct 3837 ATTGCATAGTCTGGATGCTTGGTTGTCATGGTAGCTGCAGTCTCAGCCGCCAAGGTATCC 3778 Query 78861 AACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | ||| | || |||||||||| || | || | || |||||||| | ||| Sbjct 3777 AGCTCAACTGTGGTGACCCCATGGTAGATACCATTTATCACTTTCATTGTGAT 3725 >seq22802 Length=4402 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| || | ||||| | ||||| || |||||||| || || || | ||| Sbjct 1051 TGGAATTCTCCGGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGAT 1110 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||||||||||| || || || || || || |||||||| || || | || | ||| Sbjct 1111 TCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 1170 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | || || || || || || |||| || | ||||| || || || |||| Sbjct 1171 TTACGCAGGCCGTGCTTTGCTATCTTTGCTTTCAGGGACTTCCAGTCACACAGGTCTGTT 1230 Query 77307 GGTACAACATCCCAAAGATCGTATTGTAG 77335 ||| |||||||| | || ||||| || Sbjct 1231 GGTGTTACATCCCACAAGTCATATTGCAG 1259 >seq73127 Length=3785 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || |||||||| || | ||||| | ||||| || |||||||| || || || | ||| Sbjct 2483 TGGAATTCTCCCGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGAT 2542 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||||||||||| || || || || || || |||||||| || || | || | ||| Sbjct 2543 TCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 2602 Query 77247 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAA 77306 || | || || || || || || |||| || | ||||| || || || |||| Sbjct 2603 TTACGCAGGCCGTGCTTTGCTATCTTTGCTTTCAGGGACTTCCAGTCACAGAGGTCTGTT 2662 Query 77307 GGTACAACATCCCA 77320 ||| |||||||| Sbjct 2663 GGTGTTACATCCCA 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693517325680480