Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq33510 100 4e-16 seq22802 98.7 1e-15 seq73127 93.3 6e-14 >seq33510 Length=29102 Score = 100 bits (110), Expect = 4e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || |||||| || || || || ||||| || || || || || | |||||||||| ||| Sbjct 27849 CAGATTCTCGTTAACGATACCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAA 27908 Query 47073 ATATTTTTCAT-CGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 47131 | | || | |||| |||| | |||||| || |||||||| || | ||| |||| Sbjct 27909 GTGCTGCTCTTGCGGTT-TCAGCGACTCCCAGTCCTTCATATCTTTGGAGAGATCCACTT 27967 Query 47132 CTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATT 47191 | || ||||||||||| || || || || || || ||||| |||| || || |||| | Sbjct 27968 CCTCGGCTGTCCAGAAGGAAGCTTCAGCCTTCTTGTACATTCTCCAGATGTCCTGATACT 28027 Query 47192 GGATCGGAAAAATAACAAATCT 47213 ||| || || | |||||| || Sbjct 28028 CGATAGGGAAGAGAACAAACCT 28049 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 46314 ATCTTCTT-GT--GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAA 46370 |||||||| || ||||| | || |||||| ||||||||||| | ||||| || || Sbjct 25454 ATCTTCTTTGTTCGACATGAGGCCTGCTTTTTGATATTCACCTACTCTCTTCTCAAAGAA 25513 Query 46371 ATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATT 46427 ||| |||||||| |||| ||| || || ||||| || ||||| |||||| | || || Sbjct 25514 ATTCGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAGTCAAATGGATTACTGACCTT 25570 >seq22802 Length=4402 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| || | ||||||| ||||| || |||||||| || || || | ||| Sbjct 1051 TGGAATTCTCCGGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGAT 1110 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||||||||||| || || || || || || || ||||| || || | || | ||| Sbjct 1111 TCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 1170 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | || || || || || || |||| || | ||||| || || || |||| | Sbjct 1171 TTACGCAGGCCGTGCTTTGCTATCTTTGCTTTCAGGGACTTCCAGTCACACAGGTCTGTT 1230 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAG 75930 ||| |||||||| | || ||||| || Sbjct 1231 GGTGTTACATCCCACAAGTCATATTGCAG 1259 >seq73127 Length=3785 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || |||||||| || | ||||||| ||||| || |||||||| || || || | ||| Sbjct 2483 TGGAATTCTCCCGAAAGAACTCTTCTGGTGTAGATGTTACTGGTGTACGGCTCTATGGAT 2542 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||||||||||| || || || || || || || ||||| || || | || | ||| Sbjct 2543 TCATTGTTTCCCAGGATCTGGGCCGTGGAGGCTGTTGGCATTGGGGCTAACAGGAGACTG 2602 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 || | || || || || || || |||| || | ||||| || || || |||| | Sbjct 2603 TTACGCAGGCCGTGCTTTGCTATCTTTGCTTTCAGGGACTTCCAGTCACAGAGGTCTGTT 2662 Query 75902 GGTACAACATCCCA 75915 ||| |||||||| Sbjct 2663 GGTGTTACATCCCA 2676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711752648850240