Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq9979 154 3e-32 seq112321 150 4e-31 seq60492 141 2e-28 >seq9979 Length=2718 Score = 154 bits (170), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 2366 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 2425 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || || ||||| || | ||||||||| | | || |||||||| || Sbjct 2426 TCTAGTTGTTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 2485 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||||||||| || || Sbjct 2486 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACTTCAAGGGTGATG 2542 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 2543 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2577 Score = 150 bits (166), Expect = 4e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| ||||| Sbjct 2138 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCC 2197 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || |||||||| | ||||||||| | | || |||||||| | Sbjct 2198 TCGAGTTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGT 2255 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| ||||||| |||| | | |||| | |||||||| || || || | Sbjct 2256 CCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGG 2315 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || ||||| || || |||| |||||| Sbjct 2316 TCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2349 Score = 143 bits (158), Expect = 6e-29 Identities = 164/217 (76%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 1910 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 1969 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || |||||||| | ||||||||| | | || |||||||| | Sbjct 1970 TCGAGCTGCTTT--CCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGT 2027 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAA 152067 | || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || | Sbjct 2028 CCTGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGA 2084 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || ||||| || || |||| |||||| Sbjct 2085 TGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| || ||||||||||| |||| ||| || || || || Sbjct 2594 AGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCC 2653 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || |||||||| || | ||||||||| | | || |||||||| || Sbjct 2654 TCGAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCC 2713 Query 152013 TGAAT 152017 || || Sbjct 2714 TGGAT 2718 >seq112321 Length=3025 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 2818 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCC 2759 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || |||||||| || | ||||||||| | | || |||||||| || Sbjct 2758 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 2699 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||||| |||| | | |||| | |||||||| || || || || Sbjct 2698 TGGATTTTGGATTTGACATTCTCGATGGTGTCACTAGGTTCTACTTCGAGGGTGATGGTC 2639 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 ||||| || || || || || |||| |||||| || || Sbjct 2638 TTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTTGCC 2601 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 151914 TCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAG 151973 ||||| ||||||||||| |||| ||| ||||| || || || || ||| || ||||| Sbjct 3025 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCGAGTTGTTTACCAGCGAAA 2966 Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || || | ||||||||| | | || |||||||| || || ||||| ||||||| || Sbjct 2965 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTC 2906 Query 152034 TCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 || | | |||| ||| ||||| ||||| || || || ||||| || ||||| || Sbjct 2905 TCAATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTG 2849 Query 152091 ACGAAGACCTGCAT 152104 || |||| |||||| Sbjct 2848 ACAAAGATCTGCAT 2835 >seq60492 Length=3139 Score = 141 bits (156), Expect = 2e-28 Identities = 161/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| ||||| Sbjct 1040 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCATCC 981 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||| ||| ||||| | | || |||||||| || Sbjct 980 TCGAGTTGCTTACCAGCAAAGATGAGCCGCTGTTGGTCTGGTGGAATACCTTCCTTGTCC 921 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 920 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 864 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 863 GTCTTGCCAGTAAGAGTTTTGACAAAGATCTGCAT 829 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| |||||||| ||||||||||| |||| ||| || || || || Sbjct 353 AGGACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCC 294 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||| || | | || |||||||| || Sbjct 293 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCC 234 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 233 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 177 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 176 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 1268 AGGACAAGATGGAGTGTTGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 1209 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || |||||||| || | ||||| || | | || || ||||| || Sbjct 1208 TCTAGTTGTTTACCAGCGAAGATGAGACGTTGCTGATCTGGTGGAATACCCTCCTTGTCC 1149 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 1148 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 1092 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 1091 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1057 Score = 132 bits (146), Expect = 1e-25 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| || || ||||| Sbjct 581 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCC 522 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||| || | | || |||||||| || Sbjct 521 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCC 462 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 461 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 405 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || |||| |||||| Sbjct 404 GTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 1496 AGAACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 1437 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||| || | | || || ||||| || Sbjct 1436 TCGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 1377 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| ||||||| |||| | | |||| ||| ||||| ||||| || || Sbjct 1376 TGGATTTTGGATTTGACATTCTCGATGGTGTC---ACTTGGTTCTACCTCAAGGGTGATG 1320 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| || || |||| |||||| Sbjct 1319 GTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 812 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTACCGTCC 753 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | ||||||||| | | || |||||||| || Sbjct 752 TCAAGTTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCC 693 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 || ||||| ||||||| |||| | | |||| Sbjct 692 TGGATTTTGGATTTGACATTCTCGATGGTGTC 661 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || |||||||| ||||||||||| |||| ||| ||||| || || Sbjct 125 AGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCC 66 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || |||||||| || | |||||| || | | || |||||||| || Sbjct 65 TCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCC 6 Query 152013 TGAAT 152017 || || Sbjct 5 TGGAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151860427091297