Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20japonicus_20[genbank_20GCA_5F001866495.1_202016-11- 04] 132,607 sequences; 664,370,087 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq9979 91.5 1e-13 seq60492 87.8 1e-12 >seq9979 Length=2718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186 || || || || ||| ||| || ||||||||||| |||| | ||| | |||| | Sbjct 1913 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCT 1970 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | |||||||| || |||||||| | ||||||||| |||| || | ||||||||| ||| Sbjct 1971 CGAGCTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCT 2030 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || | || | ||| | |||||||| | ||| ||||| | || || ||| Sbjct 2031 GGAT-TTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 2089 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || || ||||| ||||| Sbjct 2090 TTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 2121 >seq60492 Length=3139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||| || ||||||||||| |||| | | |||| || Sbjct 350 ACAAGATGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCGTCCTCG 291 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | |||||||||||||| || | ||||||||| ||| Sbjct 290 AGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGTGGAATACCTTCCTTGTCCTGG 231 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || | || | ||| | |||||||| | ||| ||||| | || || ||||| Sbjct 230 AT-TTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 172 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || ||||| ||||| Sbjct 171 GCCAGTCAGAGTTTTGACAAAGATCTGCAT 142 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| ||| || ||||||||||| |||| | | | || || Sbjct 578 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTCCTTCCATCCTCG 519 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | |||||||||||||| || | ||||||||| ||| Sbjct 518 AGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGG 459 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || | || | ||| | |||||||| | ||| ||||| | || || ||||| Sbjct 458 AT-TTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 400 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||| || || ||||| ||||| Sbjct 399 GCCAGTCAGGGTTTTGACAAAGATCTGCAT 370 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186 || || || || ||| ||| || ||||||||||| |||| | ||| | |||| | Sbjct 1493 ACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCT 1436 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || ||||| || |||||||| | |||||||||||||| || | ||| ||||| ||| Sbjct 1435 CGAGTTGCTTACCAGCAAAGATAAGACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 1376 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || | || | ||| | |||||||| | ||| ||||| | || || ||| Sbjct 1375 GGAT-TTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTC 1317 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || || || || ||||| ||||| Sbjct 1316 TTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359408602302519