Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9509 107 2e-18 seq5542 107 2e-18 seq12447 87.8 2e-12 seq3766 87.8 2e-12 >seq9509 Length=48202 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410 ||||||||||||||||||||||| || || ||||| || || | | ||| |||| || Sbjct 27928 AGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAG 27869 Query 17411 TATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 | | ||| | |||| | || | ||||||||| | |||||| || | ||| || || Sbjct 27868 TGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCC 27809 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGT 17530 |||| ||||| ||| ||| ||||||| || ||||| |||| || || | || | Sbjct 27808 TCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCG 27749 Query 17531 ATGGGGAATACAACATATCTATCTAAGGAT-TCCTTTA 17567 || ||||| | |||| | || ||| || | ||||||| Sbjct 27748 ATAGGGAAAAGAACAAACCT-CCTAGGGTTGTCCTTTA 27712 Score = 105 bits (116), Expect = 7e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || ||||| || ||||||||||| ||||| | || ||||| ||| ||||||| Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || || || || || || || || || || |||||||| | ||||| | Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | | | |||||| |||| | || |||||| ||||| ||| || |||| || | Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT--TCTCT 17215 | || | ||||| || ||||| ||||| || ||||||| ||||| Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTGGTCTCT 29061 >seq5542 Length=71200 Score = 107 bits (118), Expect = 2e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410 ||||||||||||||||||||||| || || ||||| || || | | ||| |||| || Sbjct 63273 AGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAG 63214 Query 17411 TATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 | | ||| | |||| | || | ||||||||| | |||||| || | ||| || || Sbjct 63213 TGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCC 63154 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGT 17530 |||| ||||| ||| ||| ||||||| || ||||| |||| || || | || | Sbjct 63153 TCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCG 63094 Query 17531 ATGGGGAATACAACATATCTATCTAAGGAT-TCCTTTA 17567 || ||||| | |||| | || ||| || | ||||||| Sbjct 63093 ATAGGGAAAAGAACAAACCT-CCTAGGGTTGTCCTTTA 63057 Score = 105 bits (116), Expect = 7e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| || ||||| || ||||||||||| ||||| | || ||||| ||| ||||||| Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || || || || || || || || || || || |||||||| | ||||| | Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | | | |||||| |||| | || |||||| ||||| ||| || |||| || | Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT--TCTCT 17215 | || | ||||| || ||||| ||||| || ||||||| ||||| Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTGGTCTCT 64368 >seq12447 Length=33603 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC--ACG 17335 |||||| ||||||||||| |||||||||||||| ||||||| | ||||||||| || Sbjct 24786 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGAC- 24728 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || |||| ||| | || ||||| || ||||| || ||||| || || || || || Sbjct 24727 TA-AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGC 24673 >seq3766 Length=89028 Score = 87.8 bits (96), Expect = 2e-12 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC--ACG 17335 |||||| ||||||||||| |||||||||||||| ||||||| | ||||||||| || Sbjct 53995 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGAC- 54053 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || |||| ||| | || ||||| || ||||| || ||||| || || || || || Sbjct 54054 TA-AATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGC 54108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517406127930120