Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9509 102 8e-17 seq5542 102 8e-17 seq12447 82.4 8e-11 seq3766 82.4 8e-11 >seq9509 Length=48202 Score = 102 bits (112), Expect = 8e-17 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || ||||| || |||||||| || || || | ||||||||| ||| |||||||| Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| || ||||||||||| || || || || || ||||| |||| ||||| || Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | ||||| |||| | || |||| | ||||| ||| | |||| || || Sbjct 29170 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 29111 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTCT 16453 || | |||| | || ||||| ||||| || || |||| ||||| Sbjct 29110 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTGGTCTCT 29061 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || || || ||||||||||||||||||||||| || || || || || ||||| Sbjct 28747 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 28688 Query 16532 AATCCATAGAAGCATCGAGCCTCCG 16556 ||||| |||||||| | |||||||| Sbjct 28687 AATCCGTAGAAGCACCTAGCCTCCG 28663 >seq5542 Length=71200 Score = 102 bits (112), Expect = 8e-17 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || || ||||| || |||||||| || || || | ||||||||| ||| |||||||| Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| || ||||||||||| || || || || || ||||| |||| ||||| || Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | ||||| |||| | || |||| | ||||| ||| | |||| || || Sbjct 64477 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 64418 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT--TCTCT 16453 || | |||| | || ||||| ||||| || || |||| ||||| Sbjct 64417 TTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTGGTCTCT 64368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| || || || ||||||||||||||||||||||| || || || || || ||||| Sbjct 64054 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 63995 Query 16532 AATCCATAGAAGCATCGAGCCTCCG 16556 ||||| |||||||| | |||||||| Sbjct 63994 AATCCGTAGAAGCACCTAGCCTCCG 63970 >seq12447 Length=33603 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTA 16575 ||| || ||||||||||| || || ||||||||||| |||| | || |||||| Sbjct 24786 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 24727 Query 16576 AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT 16635 ||||| ||| ||||||| ||||| ||||| || || || || ||||| || || | || Sbjct 24726 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAAT 24667 Query 16636 GTG 16638 ||| Sbjct 24666 GTG 24664 >seq3766 Length=89028 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTA 16575 ||| || ||||||||||| || || ||||||||||| |||| | || |||||| Sbjct 53995 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 54054 Query 16576 AAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATAT 16635 ||||| ||| ||||||| ||||| ||||| || || || || ||||| || || | || Sbjct 54055 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAAT 54114 Query 16636 GTG 16638 ||| Sbjct 54115 GTG 54117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511276580211880