Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9509 118 1e-21 seq5542 118 1e-21 >seq9509 Length=48202 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| | Sbjct 27926 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27867 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 27866 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 27807 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | || Sbjct 27806 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 27747 Query 24701 TGGAAAAATAACAAATCT 24718 || |||| |||||| || Sbjct 27746 AGGGAAAAGAACAAACCT 27729 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || ||||| | |||||| || || || || || ||||||| ||||| || | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || | ||||||||||| || || || || || || || || ||||||| Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 24277 CAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | | | ||| | || | || | ||| | |||||||| | ||||| || | Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||||||| |||||| || || || || || || || || Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073 >seq5542 Length=71200 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| | Sbjct 63271 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 63212 Query 24581 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 24640 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 63211 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 63152 Query 24641 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 24700 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | || Sbjct 63151 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 63092 Query 24701 TGGAAAAATAACAAATCT 24718 || |||| |||||| || Sbjct 63091 AGGGAAAAGAACAAACCT 63074 Score = 98.7 bits (108), Expect = 1e-15 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| || || ||||| | |||||| || || || || || ||||||| ||||| || | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || || | ||||||||||| || || || || || || || || ||||||| Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 24277 CAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 | | | | ||| | || | || | ||| | |||||||| | ||||| || | Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 ||||||| |||||| || || || || || || || || Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593561599450320