Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9509 125 7e-24 seq5542 125 7e-24 seq2947 113 5e-20 seq12447 93.3 4e-14 seq3766 93.3 4e-14 >seq9509 Length=48202 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| | |||| || ||||||| || | || | |||||| ||| | |||||| Sbjct 27717 GACAACCCTAGGAGGTTTGTTCTTTTCCCTATCGAGTATCAGGACATATGGAGAATGTAC 27776 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| || || || |||||||| | ||||||||| || || || || || | || Sbjct 27777 AAGAAGGCAGAAGCTTCTTTCTGGACAGCCGAGGAGGTCGATCTCTCAAAAGATATGAAG 27836 Query 116711 GACTGGGAGCGCTTGAA-CGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||||| | |||| | ||| || | || || | || || || || || || || Sbjct 27837 GACTGGGAGGGGCTGAAACCGCAA-GAACAGCACTTTGTTAAACATGTTCTAGCTTTCTT 27895 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| ||||||||||| ||||| |||||||| Sbjct 27896 CGCAGCCAGTGACGGCATCGTGAACGAAAATCTGGT 27931 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || ||||||||||| || || || || || ||||||| || ||||||||| Sbjct 29070 TTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAG 29129 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||||| | || || ||| | | |||| || |||| ||||| || || |||||| Sbjct 29130 TGGATCGACCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAG 29189 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| |||| || || || || || || || || |||||||||||||| || | ||| Sbjct 29190 GGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATTAATG 29249 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || ||||| || ||| ||||| ||||| |||||| |||| Sbjct 29250 CCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 29292 >seq5542 Length=71200 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 || ||||| | |||| || ||||||| || | || | |||||| ||| | |||||| Sbjct 63062 GACAACCCTAGGAGGTTTGTTCTTTTCCCTATCGAGTATCAGGACATATGGAGAATGTAC 63121 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || ||||| || || || |||||||| | ||||||||| || || || || || | || Sbjct 63122 AAGAAGGCAGAAGCTTCTTTCTGGACAGCCGAGGAGGTCGATCTCTCAAAAGATATGAAG 63181 Query 116711 GACTGGGAGCGCTTGAA-CGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||||||||| | |||| | ||| || | || || | || || || || || || || Sbjct 63182 GACTGGGAGGGGCTGAAACCGCAA-GAACAGCACTTTGTTAAACATGTTCTAGCTTTCTT 63240 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| ||||||||||| ||||| |||||||| Sbjct 63241 CGCAGCCAGTGACGGCATCGTGAACGAAAATCTGGT 63276 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || ||||||||||| || || || || || ||||||| || ||||||||| Sbjct 64377 TTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAG 64436 Query 117005 TGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||||| | || || ||| | | |||| || |||| ||||| || || |||||| Sbjct 64437 TGGATCGACCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAG 64496 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| |||| || || || || || || || || |||||||||||||| || | ||| Sbjct 64497 GGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATTAATG 64556 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 || ||||| || ||| ||||| ||||| |||||| |||| Sbjct 64557 CCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 64599 >seq2947 Length=87168 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | Sbjct 53391 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCA 53332 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| ||||| | ||||| || || || ||| | ||| Sbjct 53331 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGAC 53272 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| || ||||| || || |||| | || | ||||||| Sbjct 53271 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 53212 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| ||| |||| || ||||| || Sbjct 53211 AACATCCAGAAAGAGTCCACACTCCATCTTGT 53180 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | ||||| || || || || | |||||| Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || || || ||||| || |||| | || | |||||||||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || ||||| || Sbjct 52980 ATCCAGAAAGAGTCCACACTCCATCTTGT 52952 >seq12447 Length=33603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| ||||| ||| | || || || || || |||||||| || |||||||| || || Sbjct 24651 CCACTTCATATCTCACATTCTAGCTTTCTTTGCGGCCAGCGATGGAATCGTCAATGAAAA 24710 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 ||||| ||| | || |||||| || ||||| | || || || ||||| |||||||| Sbjct 24711 CCTGGTGGAGAGATTTAGTCAGGAAGTTCAGGTTACGGAAGCTCGATGCTTTTACGGCTT 24770 Query 116860 TCAGATCGCCATGGAG 116875 |||||| || |||||| Sbjct 24771 TCAGATAGCTATGGAG 24786 >seq3766 Length=89028 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| ||||| ||| | || || || || || |||||||| || |||||||| || || Sbjct 54130 CCACTTCATATCTCACATTCTAGCTTTCTTTGCGGCCAGCGATGGAATCGTCAATGAAAA 54071 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 ||||| ||| | || |||||| || ||||| | || || || ||||| |||||||| Sbjct 54070 CCTGGTGGAGAGATTTAGTCAGGAAGTTCAGGTTACGGAAGCTCGATGCTTTTACGGCTT 54011 Query 116860 TCAGATCGCCATGGAG 116875 |||||| || |||||| Sbjct 54010 TCAGATAGCTATGGAG 53995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515080354865840