Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6761 120 5e-22 seq863 120 5e-22 seq5140 113 7e-20 >seq6761 Length=90290 Score = 120 bits (132), Expect = 5e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||||| || ||||| || || ||||| |||||| | | ||| | | Sbjct 70743 ATGCAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCA 70802 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| ||||| |||||||||| || ||||| || || ||||||||| Sbjct 70803 GATACCATCGATAACGTAAAATCTCAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 70862 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| ||||||||||||| || || ||||| ||| ||||| | || |||||| Sbjct 70863 CAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAAT 70922 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 | || || || ||| ||||| | || ||||| |||| Sbjct 70923 GTACAGAACGAGAGCACTCTGCATCTTGTCTTACGACTACG 70963 >seq863 Length=118355 Score = 120 bits (132), Expect = 5e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || | ||| || || ||||| |||||| | || ||||| || Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| ||||||||||| || ||||| || || ||||||||| Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| |||| |||||||| || || ||||| ||| ||||| | || |||||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGATGAAAGAACACTTTCTGACTATAAT 78272 Query 124719 ATTCAAAAAGA 124729 |||| || || Sbjct 78271 GTTCAGAAGGA 78261 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 124615 TAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTG 124674 ||||| | ||| ||||||| || ||||| || || ||| ||||||| ||| ||||||||| Sbjct 78603 TAAAATATAAAGTTCAAGACAAGGAAGGAATTCCTCCTAATCAACAGAGGTTTATTTTTG 78544 Query 124675 CAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCA--AAAAGAATC 124732 | || ||||| ||||| || | ||||| | || ||||||||||| | |||| Sbjct 78543 CCGGCAAACAGTTAGAAAATGGAAGAACACTTTCTGACTATAATATTCAGCAGAAGA--G 78486 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||| | ||| | || ||||| | |||| ||||| ||| || Sbjct 78485 CACTATTCATATAGTGTTACGGCTTAGAGGAGGTATGCAAATTT 78442 >seq5140 Length=69470 Score = 113 bits (124), Expect = 7e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||| ||| || | || |||||||| || ||||| ||| || | || ||||| | | Sbjct 6074 ATGCGAATTTTAGTGAAAACACTAACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6133 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||||||||| ||||||||||| ||| |||| || || |||||| Sbjct 6134 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAAAAGGAATTCCTATGGATCAA 6193 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||| || |||| ||| ||||| ||||| || | ||||| | ||||| ||| Sbjct 6194 CAGCGGCTAATCTTTGTAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGATTACAAT 6253 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 ||| || || ||| | |||||||||||||| Sbjct 6254 ATTTGTAAGGAGAGCACTGTTCATTTGGTTTTACG 6288 Score = 104 bits (114), Expect = 4e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| | | || |||| || || ||||| ||| || | || ||||| | | Sbjct 6302 ATGCAAATGATAGTGAAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6361 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||||||||| ||||||||||| |||||||| || || | |||||| Sbjct 6362 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGGATCAA 6421 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||| |||||||| || | ||||| ||| | ||||| | |||| ||| Sbjct 6422 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTTTTTAATTACAAT 6481 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 ||| || ||| ||| | |||||||| |||| Sbjct 6482 ATTTGTAATGAAAGCACTGTTCATTTGGTGATACG 6516 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || || | ||||| | || ||||| ||| || | || ||||| Sbjct 6986 ATGCAAATTTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTCA 7045 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| || |||||||| |||||||| || || ||||||||| Sbjct 7046 GATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 7105 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA-TTAGAAGATTATAA 124717 || |||||| |||||||| | ||| ||||| ||| |||| || || ||| || Sbjct 7106 CAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGATGACAAAACACTTTCTAG-TTACAA 7164 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 |||| ||||| ||| | || ||||| ||||| Sbjct 7165 TATTTGTAAAGAGAGCACTGTTCAGTTGGTGTTACG 7200 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||||| || || | ||| | | || | || ||||| || Sbjct 6530 ATGCAAATTTTAGTGAAAACACTTACTGGTAGAACAACATCTCTGGAAGTTGAACCATCA 6589 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || ||||| || ||| |||| |||||||| || || ||||||||| Sbjct 6590 GATACCATTGAGAACGTAAAATCTAAGATTGAAGACAAAGAAGGAATTCCTCCTGATCAA 6649 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGAT 124694 || |||||| |||||||| | ||| ||||| ||| Sbjct 6650 CAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGAT 6685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755252414051200