Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2947 127 2e-24 >seq2947 Length=87168 Score = 127 bits (140), Expect = 2e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| ||| |||||||| || |||||||| ||| | || | ||||||| Sbjct 52953 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGA 53012 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||||||||||||||| || || || || || |||||||| | Sbjct 53013 GCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 53072 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 |||| ||| || | |||| |||||| | || | || ||||| | ||| | || ||| Sbjct 53073 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCTTG 53131 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||||||||| ||||| |||||||| Sbjct 53132 CCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Score = 127 bits (140), Expect = 2e-24 Identities = 159/212 (75%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCCTC 118588 |||| |||| ||| |||||||| || |||||||| ||| ||| || | | ||||| Sbjct 53181 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGG--ATAATGTTCTTCCGTCCTC 53238 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| |||||| |||||||||||||||| || || || || || |||||||| Sbjct 53239 TAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTG 53298 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| ||| || | |||| |||||| | || | || ||||| | ||| | || | Sbjct 53299 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGT-TCTACCTCAAGGGTGATGGTCT 53357 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| ||||| ||||| ||||| ||||||||| Sbjct 53358 TGCCAGTCAGTGTTTTGACAAAGATCTGCATG 53389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433716410926828