Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4098 116 4e-21 seq2947 107 2e-18 seq5570 102 9e-17 seq9152 100 3e-16 seq5193 100 3e-16 seq2351 100 3e-16 >seq4098 Length=55407 Score = 116 bits (128), Expect = 4e-21 Identities = 75/82 (91%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||| ||| |||||||||| ||||||||||||| ||||| |||||||||||||||| |||| Sbjct 29178 AAATATTGTCTCCTCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 29119 Query 60117 TCACCACTATACTACCGAGGAT 60138 ||||||||||||||||| |||| Sbjct 29118 TCACCACTATACTACCGGGGAT 29097 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37178 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37119 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 37118 TACTACCGAGGA 37107 Score = 107 bits (118), Expect = 2e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37323 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37264 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 37263 TACTACCGAGGA 37252 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37508 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37449 Query 60126 TACTACCGAGGA 60137 ||||||||||| Sbjct 37448 AACTACCGAGGA 37437 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37697 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37638 Query 60126 TACTACCGAGGA 60137 |||| ||||||| Sbjct 37637 TACTTCCGAGGA 37626 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| | ||| |||||||||||||||| ||||||||||||| Sbjct 39157 CTCCCCGGCGGGGAATCGAACCCCGTTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 39098 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 39097 TACTACCGAGGA 39086 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||||||||| ||| ||| ||||||| ||||||||||||| Sbjct 39869 CTCCCCGGCGGGGAATCGAACCCTGGTCTTTCGCATGATAGGCGGAGATACTCACCACTA 39810 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 39809 TACTACCGAGGA 39798 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/72 (90%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 28732 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCG--TGACAGGCGGAGATACTCACCACTA 28675 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 28674 TACTACCGAGGA 28663 >seq2947 Length=87168 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| ||| || || || ||||| || | | || | |||| || ||||| Sbjct 52957 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTG 53016 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||||||| || ||||| ||||||||||| | || | | ||||||||| |||||| Sbjct 53017 CTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTT 53076 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 ||||| || | | ||||| || | ||| || || | |||||||| ||||| || Sbjct 53077 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 53136 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || || || |||||||| ||||| Sbjct 53137 CAGAGTTTTGACAAAGATCTGCAT 53160 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| ||| || || || ||||| || | | || | |||| ||||| || Sbjct 53185 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTG 53244 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 ||||||||||| ||||| ||||||||||| | || | | ||||||||| |||||| Sbjct 53245 TTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 53304 Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 ||||| || | | ||||| || | ||| || || | |||||||| ||||| || Sbjct 53305 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 53364 Query 43160 TAGCGTCTTTACAAAGATTTGCATTTT 43186 || || || |||||||| ||||| || Sbjct 53365 CAGTGTTTTGACAAAGATCTGCATGTT 53391 >seq5570 Length=84168 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | || ||||||||||||| ||||| |||||||||||||||| |||||| ||||| Sbjct 73756 TCTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACT 73815 Query 60125 ATACTACCGAGGATTG 60140 ||||||| |||||||| Sbjct 73816 ATACTACTGAGGATTG 73831 >seq9152 Length=42681 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | || ||||||||||||| ||||| |||||||||||||||| |||||| |||||| Sbjct 39411 CTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACTA 39352 Query 60126 TACTACCGAGGATTG 60140 |||||| |||||||| Sbjct 39351 TACTACTGAGGATTG 39337 >seq5193 Length=60789 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 45324 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 45383 Query 60126 TACTACCGAGGAT 60138 ||||||| ||||| Sbjct 45384 TACTACCAAGGAT 45396 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 45469 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 45528 Query 60126 TACTACCGAGGAT 60138 ||||||| ||||| Sbjct 45529 TACTACCAAGGAT 45541 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 48413 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 48472 Query 60126 TACTACCGAGGAT 60138 ||||||| ||||| Sbjct 48473 TACTACCAAGGAT 48485 >seq2351 Length=64399 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | || ||||||||||||| ||||| |||||||||||||||| |||||| |||||| Sbjct 15778 CTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACTA 15719 Query 60126 TACTACCGAGGATTG 60140 |||||| |||||||| Sbjct 15718 TACTACTGAGGATTG 15704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571663502304520