Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02-
27] 21,559 sequences; 873,088,235 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq863 89.7 8e-13
seq6761 86.0 9e-12
seq5140 84.2 3e-11
>seq863
Length=118355
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109
|| |||||||| | ||| || | ||| | ||| |||| || |||||||| || ||
Sbjct 78453 CCTCCTCTAAGCCGTAACACTATATGAATAGTGCTCTTCTGCTGA-ATATTATAGTCAGA 78511
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| ||||| | || ||||| ||||| || |||||||| || || || |||| |||||
Sbjct 78512 AAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAGG 78571
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| || |||||
Sbjct 78572 AATTCCTTCCTTGTCTTG 78589
>seq6761
Length=90290
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 146056 TCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGT 146115
||||| ||||| ||||||| | || | ||| | ||||| || || ||||| ||
Sbjct 70736 TCTAATCCTTAACACCAAATAAACCGTGCTCTTCTTACAAATATTGTACTCAGAAAGTGT 70677
Query 146116 TCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCC 146175
|| | ||| |||| ||||| || |||||||| | | | |||||||| |||||||||||
Sbjct 70676 TCCTCCATCTGCTAACTGTTTGCCTGCAAAAATAATTGTCTGCTGATCAGGAGGAATTCC 70617
Query 146176 TTCTTTATCTTG 146187
||| || |||||
Sbjct 70616 TTCCTTGTCTTG 70605
>seq5140
Length=69470
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113
||||| || | || |||||||| | ||| ||| ||| | ||||| |||| ||||
Sbjct 6525 CCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAGT 6466
Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT-TGCTGATCCGGAGGAAT 146172
||||| | ||| ||||| | || || ||||| || || || || ||||||| ||||||
Sbjct 6465 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGAT-AAGCTGCTGTTGATCCGTAGGAAT 6407
Query 146173 TCCTTCTTTATCTTG 146187
||||||||| |||||
Sbjct 6406 TCCTTCTTTGTCTTG 6392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743326028929280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |