Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq863 89.7 8e-13 seq6761 86.0 9e-12 seq5140 84.2 3e-11 >seq863 Length=118355 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGA-TTCTTTAGATATATTATAATCTGA 146109 || |||||||| | ||| || | ||| | ||| |||| || |||||||| || || Sbjct 78453 CCTCCTCTAAGCCGTAACACTATATGAATAGTGCTCTTCTGCTGA-ATATTATAGTCAGA 78511 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | || ||||| ||||| || |||||||| || || || |||| ||||| Sbjct 78512 AAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAGG 78571 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| || ||||| Sbjct 78572 AATTCCTTCCTTGTCTTG 78589 >seq6761 Length=90290 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 146056 TCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGT 146115 ||||| ||||| ||||||| | || | ||| | ||||| || || ||||| || Sbjct 70736 TCTAATCCTTAACACCAAATAAACCGTGCTCTTCTTACAAATATTGTACTCAGAAAGTGT 70677 Query 146116 TCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCC 146175 || | ||| |||| ||||| || |||||||| | | | |||||||| ||||||||||| Sbjct 70676 TCCTCCATCTGCTAACTGTTTGCCTGCAAAAATAATTGTCTGCTGATCAGGAGGAATTCC 70617 Query 146176 TTCTTTATCTTG 146187 ||| || ||||| Sbjct 70616 TTCCTTGTCTTG 70605 >seq5140 Length=69470 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 146054 CCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGA 146113 ||||| || | || |||||||| | ||| ||| ||| | ||||| |||| |||| Sbjct 6525 CCTCTGAGCCGTATCACCAAATGAACAGTGCTTTCATTACAAATATTGTAATTAAAAAGT 6466 Query 146114 GTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT-TGCTGATCCGGAGGAAT 146172 ||||| | ||| ||||| | || || ||||| || || || || ||||||| |||||| Sbjct 6465 GTTCTTCCATCTTCTAACTTCTTACCTGCAAAGAT-AAGCTGCTGTTGATCCGTAGGAAT 6407 Query 146173 TCCTTCTTTATCTTG 146187 ||||||||| ||||| Sbjct 6406 TCCTTCTTTGTCTTG 6392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743326028929280