Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2947 91.5 1e-13 >seq2947 Length=87168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | | |||| || | |||||| || || || Sbjct 52970 TCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAG 53029 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| ||||||||||| || | | |||||||| || ||| | ||| | || Sbjct 53030 ATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGAT-TTTGGATTTGACATT 53088 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || |||||||| || Sbjct 53089 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGAC 53148 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 53149 AAAGATCTGCAT 53160 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||||| | | |||| || | || || || ||||| Sbjct 53198 TCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAG 53257 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| ||||||||||| ||| | | |||||||| || ||| | ||| | || Sbjct 53258 ATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGAT-TTTGGATTTGACATT 53316 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | ||| || || | |||||||| ||||| || || ||||| || Sbjct 53317 CTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGAC 53376 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 53377 AAAGATCTGCAT 53388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322987112731040