Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9509 100 3e-16 seq5542 100 3e-16 seq12447 86.0 6e-12 seq3766 86.0 6e-12 >seq9509 Length=48202 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACAT-TTTTTGATATTCACTAACTCTCTT 15966 || || | ||||| ||| || ||||| | || | |||||||||||||| |||||||| Sbjct 30440 AAGACCTGATCTTCTTTGTTCGACATGA-TGCCTGCTTTTTGATATTCACCTACTCTCTT 30382 Query 15967 TTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||||||||| ||||| || || | |||||| || ||||| |||||||||||||| Sbjct 30381 CTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATT 30325 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 28747 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 28688 Query 16565 AAACCATAAAAGCATCTAGCTTCGGAT 16591 || || || ||||| ||||| || ||| Sbjct 28687 AATCCGTAGAAGCACCTAGCCTCCGAT 28661 >seq5542 Length=71200 Score = 100 bits (110), Expect = 3e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACAT-TTTTTGATATTCACTAACTCTCTT 15966 || || | ||||| ||| || ||||| | || | |||||||||||||| |||||||| Sbjct 65749 AAGACCTGATCTTCTTTGTTCGACATGA-TGCCTGCTTTTTGATATTCACCTACTCTCTT 65691 Query 15967 TTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023 ||||||||||| ||||| || || | |||||| || ||||| |||||||||||||| Sbjct 65690 CTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCCATGAAATCAAAAGGATT 65634 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 ||||| || || || |||||||| ||||||||||| |||||||| || ||||| ||||| Sbjct 64054 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 63995 Query 16565 AAACCATAAAAGCATCTAGCTTCGGAT 16591 || || || ||||| ||||| || ||| Sbjct 63994 AATCCGTAGAAGCACCTAGCCTCCGAT 63968 >seq12447 Length=33603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCA-GAGT 16607 |||||| ||||||||||| || |||||||||| |||||| | | || ||||| || | Sbjct 24786 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 24727 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| | | || | | |||||| || || ||||||||||| || ||||| || || || | Sbjct 24726 AAATC-TCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 24668 Query 16668 TGTG 16671 |||| Sbjct 24667 TGTG 24664 >seq3766 Length=89028 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAGT 16607 |||||| ||||||||||| || |||||||||| |||||| | | || |||| | || | Sbjct 53995 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 54054 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| || || | | |||||| || || ||||||||||| || ||||| || || || | Sbjct 54055 -AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGAA 54113 Query 16668 TGTG 16671 |||| Sbjct 54114 TGTG 54117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462387358797400