Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2947 107 2e-18 >seq2947 Length=87168 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||| ||||| |||||||||||| | | | |||| || | Sbjct 53181 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTA 53240 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 ||||||| || ||||| || | ||||| ||||| || || | ||| ||||||||| | Sbjct 53241 GTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGA 53300 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| || || | | | | |||| | || ||||| | ||| || ||||||| Sbjct 53301 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGC 53360 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 | ||||| || || |||||||| ||||||||||||| Sbjct 53361 CAGTCAGTGTTTTGACAAAGATCTGCATGTTGCCTC 53396 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGTC 45186 |||| || || ||| ||| ||||| |||||||||||| | ||| | |||| || Sbjct 52953 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTT--CTTCCGTCCTC 53010 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || || | ||||| ||||| || || | ||| ||||||||| Sbjct 53011 GAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 53070 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||| || || | | | | |||| | || ||||| | ||| || ||||| Sbjct 53071 GATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTT 53130 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| || |||||||| ||||| Sbjct 53131 GCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394971393867739