Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9509 113 4e-20 seq5542 113 4e-20 >seq9509 Length=48202 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 30461 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 30402 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||||| ||||| || |||||||| |||||||| || |||||||| || || ||| Sbjct 30401 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 30342 Query 13976 ATAAAATCAAATGGATT 13992 || |||||||| ||||| Sbjct 30341 ATGAAATCAAAAGGATT 30325 >seq5542 Length=71200 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 65770 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 65711 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||||| ||||| || |||||||| |||||||| || |||||||| || || ||| Sbjct 65710 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 65651 Query 13976 ATAAAATCAAATGGATT 13992 || |||||||| ||||| Sbjct 65650 ATGAAATCAAAAGGATT 65634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482215613890120