Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2947 86.0 5e-12 >seq2947 Length=87168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || ||||| || ||||| || ||||||||||||| Sbjct 53162 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 53221 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | || || | |||||| || || |||| || | || || || ||| Sbjct 53222 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 53281 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||| || |||| ||||| | | | ||||||| || || Sbjct 53282 ATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACC 53341 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||| ||||||| | ||||| |||| |||||| ||||| || ||||| || Sbjct 53342 TCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATGTT 53391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379244327245455