Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2947 113 4e-20 seq3766 100 3e-16 seq1416 89.7 5e-13 seq9509 82.4 7e-11 seq5542 82.4 7e-11 >seq2947 Length=87168 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || || || ||||| ||||| || |||||| | || || ||||| Sbjct 53391 AACATGCAGATCTTTGTCAAAACACTGACTGGCAAGACCATCACCCTTGAGGTAGAACCA 53332 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | |||||| | ||| |||||||||||| | || || ||| Sbjct 53331 AGTGACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCCCCAGAC 53272 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || |||||||| ||||| | || ||| | || | ||| || Sbjct 53271 CAGCAGCGTCTCATCTTCGCTGGTAAACAACTAGAGGACGGAAGAACATTATCCGACTAC 53212 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || || ||||| || ||| | || | || |||| Sbjct 53211 AACATCCAGAAAGAGTCCACACTCCATCTTGTCCTTCGTCTCCGTGGTGGTA 53160 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || |||||||| ||||| || |||||| | || || ||||| Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || ||| | || | ||| || ||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || ||||| || || || ||||| || ||| Sbjct 52980 ATCCAGAAAGAGTCCACACTCCATCTTGTCCTT 52948 >seq3766 Length=89028 Score = 100 bits (110), Expect = 3e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 ||||| ||||| | | |||||| ||||||| || ||||| || || || ||| ||| Sbjct 51097 CCCGGTCTGACCTATTCCAACGAACTGATATCTCGAGACGAAGGACTACACTGTGACTTT 51038 Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178 || ||| | ||| |||| ||||||| | | |||||| || || || Sbjct 51037 GCCTGCTTGCTGTTTAAATACATCAAGCATAAACCATCACAGGATCGGATAGCAGAGATC 50978 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 ||| ||| |||||||| ||||| || || ||| || | ||||| |||| || | || Sbjct 50977 ATCTGCGATGCGGTCGCCATCGAGAAGGAATTTCTCTGCAAAGCCGTACCCGTAGGGCTG 50918 Query 58239 CTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 |||||||||| | | ||| || |||||||||||||||| ||||| |||| || Sbjct 50917 ATCGGTATGAATGTCGCCCTCATGGCACAGTACATTGAGTTTGTAGCCGATCGACTCCTG 50858 Query 58299 CTCGAACT 58306 | ||||| Sbjct 50857 GTAGAACT 50850 >seq1416 Length=111358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || || || |||||||| || || || || || | ||| | || || | Sbjct 36915 TCATGAAGAGGTCTGGAATCCATAGGGCATAAAAGAGGTCCCTGGCTCTTTGTTCTTCCT 36856 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 ||||| |||||||| |||||||||| || | |||||||| ||||||||||| | || Sbjct 36855 TGCCGTGATTCTTTTTGCAATCCAAAAATTCGTAGACGTCCGCGTGCCACGGCTCCAAGT 36796 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 ||| || || || || ||||||| Sbjct 36795 AAATTGCGAAAGCACCAGGTCTCT 36772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 || ||| |||||||||| || ||||| || ||||| || || || || || | || || Sbjct 37474 GAAGTGAACTCTACAATCTCTGTACAGAGGTTGCTGCATTTGATTGTACCAAGGTTCTTC 37415 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTC 23175 ||||| || || | || || | |||||||||||||||||| ||||| || ||||| Sbjct 37414 TGGTTACTCTTCCTGTTACAAGCATCCTTGTAGAGCATGTATGGCGTTCCGGTCTC 37359 >seq9509 Length=48202 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||||| | | || || || | || ||||| | || || || || |||| ||| Sbjct 27702 GAACCACTCCTAAAGGACAACCCTAGGAGGTTTGTTCTTTTCCCTATCGAGTATCAGGAC 27761 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || |||| |||||||| ||||||||||| || || ||||| | ||| || || || || Sbjct 27762 ATATGGAGAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACAGCCGAGGAGGTCGATCTC 27821 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAA 57685 || || ||| ||| || ||||| || ||| | | |||| | ||| |||| Sbjct 27822 TCAAAAGATATGAAGGACTGGGAGGGGCT----GAAACCGCAAGAACAGCACTTTGTTAA 27877 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 ||| || | || || ||||| || || || || || ||||| ||| |||| Sbjct 27878 ACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGCATCGTGAACGAAAATCTGGT 27931 >seq5542 Length=71200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||||| | | || || || | || ||||| | || || || || |||| ||| Sbjct 63047 GAACCACTCCTAAAGGACAACCCTAGGAGGTTTGTTCTTTTCCCTATCGAGTATCAGGAC 63106 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || |||| |||||||| ||||||||||| || || ||||| | ||| || || || || Sbjct 63107 ATATGGAGAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACAGCCGAGGAGGTCGATCTC 63166 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAA 57685 || || ||| ||| || ||||| || ||| | | |||| | ||| |||| Sbjct 63167 TCAAAAGATATGAAGGACTGGGAGGGGCT----GAAACCGCAAGAACAGCACTTTGTTAA 63222 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 ||| || | || || ||||| || || || || || ||||| ||| |||| Sbjct 63223 ACATGTTCTAGCTTTCTTCGCAGCCAGTGACGGCATCGTGAACGAAAATCTGGT 63276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445646271527280