Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9509 123 3e-23 seq5542 123 3e-23 >seq9509 Length=48202 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||| ||||| || || ||||||||||| || || || | |||||||| | ||| | Sbjct 27926 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27867 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 27866 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 27807 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||| Sbjct 27806 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 27747 Query 34148 TGGGAAAATAACAAATCT 34165 ||||||| |||||| || Sbjct 27746 AGGGAAAAGAACAAACCT 27729 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| |||||||| || | || || || ||||||||||| || |||| ||| || || Sbjct 30405 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 30346 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATT 33379 |||||||||||||| ||||| |||| || Sbjct 30345 CTCCATGAAATCAAAAGGATTACTAACCTT 30316 >seq5542 Length=71200 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33968 ATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 34027 |||||| ||||| || || ||||||||||| || || || | |||||||| | ||| | Sbjct 63271 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 63212 Query 34028 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 34087 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 63211 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 63152 Query 34088 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 34147 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||| Sbjct 63151 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 63092 Query 34148 TGGGAAAATAACAAATCT 34165 ||||||| |||||| || Sbjct 63091 AGGGAAAAGAACAAACCT 63074 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 |||||| |||||||| || | || || || ||||||||||| || |||| ||| || || Sbjct 65714 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 65655 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATT 33379 |||||||||||||| ||||| |||| || Sbjct 65654 CTCCATGAAATCAAAAGGATTACTAACCTT 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629647872029520