Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9509 113 4e-20 seq5542 113 4e-20 seq12447 89.7 5e-13 seq3766 89.7 5e-13 >seq9509 Length=48202 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || ||||| ||||| ||||| | || ||||| ||||| ||||| || Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||| || || || || || ||||| ||||| ||||| ||| Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 11774 ACTACTCTTTCTCCATATACCTTGTTGCTAGAT-----ATCCATTTTCTGGCCCAATCAG 11828 || || | ||| | | ||||| | | || | ||||| || ||||| |||| Sbjct 29170 ACCACACGTTCGC--TGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | ||||| ||||| | || ||||| || ||||| ||||| || Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTG 29067 >seq5542 Length=71200 Score = 113 bits (124), Expect = 4e-20 Identities = 161/226 (71%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || || || || ||||| ||||| ||||| | || ||||| ||||| ||||| || Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||||||||| || || || || || ||||| ||||| ||||| ||| Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 11774 ACTACTCTTTCTCCATATACCTTGTTGCTAGAT-----ATCCATTTTCTGGCCCAATCAG 11828 || || | ||| | | ||||| | | || | ||||| || ||||| |||| Sbjct 64477 ACCACACGTTCGC--TGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | ||||| ||||| | || ||||| || ||||| ||||| || Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAATAATTG 64374 >seq12447 Length=33603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 11705 CGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCT 11764 |||||||| | ||||||||| || ||||| || ||||| ||||| || |||||||| | | Sbjct 26741 CGTTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGAT 26682 Query 11765 GCAAATGCTACTACTCTTTCTCC--AT-ATACCTTGTTGCTAGATATCCATTTTCTGGCC 11821 ||||||||||||| || || | || || ||| | || || ||||| || ||| Sbjct 26681 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 26622 Query 11822 CAATCAGCTTTCTTTTTTACGCA 11844 || || ||||| ||||| || || Sbjct 26621 CAGTCTGCTTTTTTTTTGACACA 26599 >seq3766 Length=89028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 11705 CGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCT 11764 |||||||| | ||||||||| || ||||| || ||||| ||||| || |||||||| | | Sbjct 52040 CGTTTTTTCAACCAAAATATGGCTGCAAACGACCCAGAGAAGAAAATGCCCTCCACTGAT 52099 Query 11765 GCAAATGCTACTACTCTTTCTCC--AT-ATACCTTGTTGCTAGATATCCATTTTCTGGCC 11821 ||||||||||||| || || | || || ||| | || || ||||| || ||| Sbjct 52100 GCAAATGCTACTAGCCTCTCAGCGAATGATGCCTCGGAACTTGAAATCCACTTCAATGCC 52159 Query 11822 CAATCAGCTTTCTTTTTTACGCA 11844 || || ||||| ||||| || || Sbjct 52160 CAGTCTGCTTTTTTTTTGACACA 52182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468398538422960