Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02-
27] 21,559 sequences; 873,088,235 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq9509 118 1e-21
seq5542 118 1e-21
>seq9509
Length=48202
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603
|||||| ||||| || |||||||||||||| || || || | |||||||| | ||| |
Sbjct 27926 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27867
Query 36604 TTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 36663
| ||| | ||| | || | ||| || || |||||||| || | ||| || || ||
Sbjct 27866 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 27807
Query 36664 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 36723
||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||
Sbjct 27806 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 27747
Query 36724 TGGAAAAATAACAAATCT 36741
|| |||| |||||| ||
Sbjct 27746 AGGGAAAAGAACAAACCT 27729
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| || || ||||| | |||||| || || || || || ||||||| ||||| || |
Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| || || | ||||||||||| || || || || || || || || |||||||
Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173
Query 36300 CAATAAGTCTCTCTCCATAACCGGC-AC--TGTCATGTATCCACTTTTGAGCCCAATCGG 36356
| | | | || | || | ||| || ||| | |||||||| | ||||| || |
Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396
||||||| |||||| || || || || || || || ||
Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073
>seq5542
Length=71200
Score = 118 bits (130), Expect = 1e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 36544 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 36603
|||||| ||||| || |||||||||||||| || || || | |||||||| | ||| |
Sbjct 63271 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 63212
Query 36604 TTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 36663
| ||| | ||| | || | ||| || || |||||||| || | ||| || || ||
Sbjct 63211 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 63152
Query 36664 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 36723
||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||
Sbjct 63151 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 63092
Query 36724 TGGAAAAATAACAAATCT 36741
|| |||| |||||| ||
Sbjct 63091 AGGGAAAAGAACAAACCT 63074
Score = 98.7 bits (108), Expect = 1e-15
Identities = 155/220 (70%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| || || ||||| | |||||| || || || || || ||||||| ||||| || |
Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| || || | ||||||||||| || || || || || || || || |||||||
Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480
Query 36300 CAATAAGTCTCTCTCCATAACCGGC-AC--TGTCATGTATCCACTTTTGAGCCCAATCGG 36356
| | | | || | || | ||| || ||| | |||||||| | ||||| || |
Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420
Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396
||||||| |||||| || || || || || || || ||
Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657995430657560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |