Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9509 132 7e-26 seq5542 132 7e-26 seq1416 87.8 3e-12 >seq9509 Length=48202 Score = 132 bits (146), Expect = 7e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| || Sbjct 27926 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27867 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 27866 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 27807 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||| Sbjct 27806 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 27747 Query 50526 TGGGAAAATAACAAATCT 50543 ||||||| |||||| || Sbjct 27746 AGGGAAAAGAACAAACCT 27729 Score = 120 bits (132), Expect = 4e-22 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| |||||||| || || || || || ||||||| ||||| || | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | |||||||| || || || ||||| || || || |||||||||| Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | | || | || |||| | ||| | |||||||| | ||||| || | Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||||| |||||| || || ||||| ||||| || || Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073 >seq5542 Length=71200 Score = 132 bits (146), Expect = 7e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 50346 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| || Sbjct 63271 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 63212 Query 50406 TTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTC 50465 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 63211 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 63152 Query 50466 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGAT 50525 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | ||| Sbjct 63151 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 63092 Query 50526 TGGGAAAATAACAAATCT 50543 ||||||| |||||| || Sbjct 63091 AGGGAAAAGAACAAACCT 63074 Score = 120 bits (132), Expect = 4e-22 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || || ||||| |||||||| || || || || || ||||||| ||||| || | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | |||||||| || || || ||||| || || || |||||||||| Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 50102 CAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 50158 | || | | || | || |||| | ||| | |||||||| | ||||| || | Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 50159 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||||||| |||||| || || ||||| ||||| || || Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380 >seq1416 Length=111358 Score = 87.8 bits (96), Expect = 3e-12 Identities = 121/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttG-TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAA 80736 |||| || |||||| ||| |||||||||| || || || || ||||||||||| ||||| Sbjct 32216 CACTGAA-AGTTTTCTTGGTTTCCTTGTGCAGGTTAGAAACAGCTATTCTGGCTGCTAAG 32158 Query 80737 ATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCC 80796 || ||||| |||||||| | || || || || || | || || |||| || ||| Sbjct 32157 ATTGCATAGTCTGGATGCTTGGTTGTCATGGTAGCCGCAGTCTCAGCCGCCAAGGTATCC 32098 Query 80797 AATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 | ||| || || || || |||| || || || | || || ||||| Sbjct 32097 AGTTCAACTGTGGTGACCCCATGGTAGATACCATTTATCACTTTCAT 32051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718075235536760