Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq9509 113 4e-20 seq5542 113 4e-20 seq12447 89.7 5e-13 seq3766 89.7 5e-13 >seq9509 Length=48202 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 30461 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 30402 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| ||||| || |||||||| |||||||| || |||||||| || || ||| Sbjct 30401 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 30342 Query 13644 ATAAAATCAAATGGATT 13660 || |||||||| ||||| Sbjct 30341 ATGAAATCAAAAGGATT 30325 Score = 109 bits (120), Expect = 5e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || ||||| |||||||| || ||||| | |||||||| ||||| ||||| | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || |||||||||||||| || || || || || ||||| || || ||||| | Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 14014 CTA 14016 ||| Sbjct 29172 CTA 29170 >seq5542 Length=71200 Score = 113 bits (124), Expect = 4e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 65770 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 65711 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||||| ||||| || |||||||| |||||||| || |||||||| || || ||| Sbjct 65710 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 65651 Query 13644 ATAAAATCAAATGGATT 13660 || |||||||| ||||| Sbjct 65650 ATGAAATCAAAAGGATT 65634 Score = 109 bits (120), Expect = 5e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||| || ||||| |||||||| || ||||| | |||||||| ||||| ||||| | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || |||||||||||||| || || || || || ||||| || || ||||| | Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 14014 CTA 14016 ||| Sbjct 64479 CTA 64477 >seq12447 Length=33603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/124 (78%), Gaps = 6/124 (5%) Strand=Plus/Minus Query 14187 TCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCC-GAG 14243 ||||||||||||||||| || |||||||||| |||||||| ||| || |||||| || Sbjct 24785 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACC--TGAACTTCCTGAC 24728 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14303 | |||||| || ||| |||||||| || || ||||| || || ||||| || || | Sbjct 24727 T-AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGA 24669 Query 14304 ATGT 14307 |||| Sbjct 24668 ATGT 24665 >seq3766 Length=89028 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/124 (78%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 14187 TCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCC-GAG 14243 ||||||||||||||||| || |||||||||| |||||||| ||| || |||||| || Sbjct 53996 TCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACC--TGAACTTCCTGAC 54053 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAAT 14303 | |||||| || ||| |||||||| || || ||||| || || ||||| || || | Sbjct 54054 T-AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGCTAGA 54112 Query 14304 ATGT 14307 |||| Sbjct 54113 ATGT 54116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479598719300600