Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq9509 104 2e-17 seq5542 104 2e-17 >seq9509 Length=48202 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 30461 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 30402 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||||| ||||| || ||||| || |||||||| || |||||||| || || ||| Sbjct 30401 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 30342 Query 13432 ATAAAATCGAATGGATT 13448 || ||||| || ||||| Sbjct 30341 ATGAAATCAAAAGGATT 30325 >seq5542 Length=71200 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| | ||||| || || | ||| |||||||| || || | ||| |||| Sbjct 65770 TAAAAATCTGCTTCTAAGCTGAAGACCTGATCTTCTTTGTTCGACATGATGCCTGCTTTT 65711 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||||| ||||| || ||||| || |||||||| || |||||||| || || ||| Sbjct 65710 TGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTTCTCC 65651 Query 13432 ATAAAATCGAATGGATT 13448 || ||||| || ||||| Sbjct 65650 ATGAAATCAAAAGGATT 65634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478459826300760