Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9509 87.8 2e-12 seq5542 87.8 2e-12 >seq9509 Length=48202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| || || || | ||| || ||||||||||| ||||||||||| || || || ||| Sbjct 28747 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 28688 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || || || || || |||||||| ||| ||||||| || Sbjct 28687 AATCCGTAGAAGCACCTAGCCTCCGATGCCTGAACCTC 28650 >seq5542 Length=71200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| || || || | ||| || ||||||||||| ||||||||||| || || || ||| Sbjct 64054 ATATATGTGTCGATAAGTAAACTGTACATTTCTGAGTGAATATTTTCGATTGCAATCTGG 63995 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 || || || || || |||||||| ||| ||||||| || Sbjct 63994 AATCCGTAGAAGCACCTAGCCTCCGATGCCTGAACCTC 63957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430869159239718