Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2947 107 2e-18 seq2470 84.2 2e-11 >seq2947 Length=87168 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | | ||||| ||||| ||||||||||| ||| Sbjct 53006 TCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTG 53065 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | ||| || || |||| ||||| Sbjct 53066 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 53124 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| |||||||| |||||||||||||| Sbjct 53125 GGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| || ||||| || | ||||| | | ||||| ||||| ||||||||||| ||| Sbjct 53234 TCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTG 53293 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| | ||||| ||| |||||| | ||| || || |||| ||||| Sbjct 53294 TCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CTTGGTTCTACCTCAAGGGTGAT 53352 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || ||||| || ||||| ||||||||||||||| Sbjct 53353 GGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 53389 >seq2470 Length=135016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951 ||||| ||||||||||| ||||| | ||||| | ||||| ||| |||||| | Sbjct 94881 TCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCA-CT 94939 Query 94952 TGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || |||| |||||||| || ||||| || ||||| ||||||||||||||| Sbjct 94940 TGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 94997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448170391125240