Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq986 197 2e-46 seq6151 89.7 8e-14 >seq986 Length=90218 Score = 197 bits (218), Expect = 2e-46 Identities = 194/247 (79%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| ||||||||||| || || || Sbjct 17312 CGCCAAGCGTCACCGAAAAGTGTTGCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 17253 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| || |||||||||||||| || ||| |||| ||| | |||| ||||||| Sbjct 17252 CCGTCGTCTCGCCCGTCGTGGTGGAGTAAAACGTATCTCCGGACTCATCTACGAAGAGAC 17193 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG- 16610 |||| ||| ||||| ||||| | | | ||| |||| |||||| || || |||| | Sbjct 17192 CCGTGGTGTCCTGAAGGTCTTCTTAGAAAACGTCATCCGTGATGCAGTC-AC-ATACTGT 17135 Query 16611 -AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||| || | |||||||||||| ||||||| |||||||||| |||||||||||| Sbjct 17134 GAGCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTATGCCTTGAAACGTCAA 17075 Query 16670 GGCCGTA 16676 || |||| Sbjct 17074 GGGCGTA 17068 Score = 194 bits (214), Expect = 3e-45 Identities = 192/245 (78%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| || |||||||| || || || Sbjct 13994 CGCCAAGCGTCACCGAAAAGTGTTGCGTGATAACATCCAGGGTATCACCAAACCCGCCAT 13935 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||||||||| || ||| |||| ||| | |||| ||||||| Sbjct 13934 CCGTCGTCTCGCTCGTCGTGGTGGAGTAAAACGTATCTCCGGACTCATCTACGAAGAGAC 13875 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG- 16610 |||| ||| ||||| ||||| | | | ||| |||| |||||| || || |||| | Sbjct 13874 CCGTGGTGTCCTGAAGGTCTTCTTAGAAAACGTCATCCGTGATGCCGTC-AC-ATACTGT 13817 Query 16611 -AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 ||||||| || | |||||||||||| ||||||| |||||||||| |||||||||||| Sbjct 13816 GAGCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTATGCCTTGAAACGTCAA 13757 Query 16670 GGCCG 16674 || || Sbjct 13756 GGGCG 13752 >seq6151 Length=31746 Score = 89.7 bits (98), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | | || ||||||||||| || |||||||| || || || Sbjct 15773 CGCCAAGCGTCACCGAAAAGTGTTGCGTGATAACATCCAGGGTATCACCAAACCCGCCAT 15832 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCA 16520 ||||||||| ||||||||||||||||||| Sbjct 15833 CCGTCGTCTCGCTCGTCGTGGTGGAGTCA 15861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79055488455387