Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9509 96.9 4e-15 seq5542 96.9 4e-15 >seq9509 Length=48202 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 |||||||| || || | ||| ||||| ||||| | || ||||||||||| | || || Sbjct 29290 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 29231 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| || |||| ||||||| |||||| || || |||||||| || || ||||| || Sbjct 29230 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 29171 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || | ||||| | ||| | | | |||| | ||||| || ||||| | ||| Sbjct 29170 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 29111 Query 21680 TT-TTCTTTA 21688 || ||||||| Sbjct 29110 TTCTTCTTTA 29101 >seq5542 Length=71200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 |||||||| || || | ||| ||||| ||||| | || ||||||||||| | || || Sbjct 64597 TCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCTTG 64538 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| || |||| ||||||| |||||| || || |||||||| || || ||||| || Sbjct 64537 AGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCT 64478 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || | ||||| | ||| | | | |||| | ||||| || ||||| | ||| Sbjct 64477 ACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCC 64418 Query 21680 TT-TTCTTTA 21688 || ||||||| Sbjct 64417 TTCTTCTTTA 64408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531757459383160