Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9509 125 9e-24 seq5542 125 9e-24 >seq9509 Length=48202 Score = 125 bits (138), Expect = 9e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| |||||| ||||| || |||||||||||||| || || || | |||||||| | || Sbjct 27930 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 27871 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | | | ||| | ||| | || | ||| || || |||||||| || | ||| || | Sbjct 27870 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 27811 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || ||||||| || || || |||||||| || ||||| |||| ||||| | ||| | Sbjct 27810 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 27751 Query 33866 GGATTGGGAAAATAACAAATCT 33887 ||| ||||||| |||||| || Sbjct 27750 CGATAGGGAAAAGAACAAACCT 27729 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 |||||| |||||||| || | || || || ||||||||||| || |||| ||| || || Sbjct 30405 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 30346 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATT 33101 |||||||||||||| ||||| |||| || Sbjct 30345 CTCCATGAAATCAAAAGGATTACTAACCTT 30316 >seq5542 Length=71200 Score = 125 bits (138), Expect = 9e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||| |||||| ||||| || |||||||||||||| || || || | |||||||| | || Sbjct 63275 CCAGATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAA 63216 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | | | ||| | ||| | || | ||| || || |||||||| || | ||| || | Sbjct 63215 AGTGCTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCT 63156 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || ||||||| || || || |||||||| || ||||| |||| ||||| | ||| | Sbjct 63155 CCTCGGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACT 63096 Query 33866 GGATTGGGAAAATAACAAATCT 33887 ||| ||||||| |||||| || Sbjct 63095 CGATAGGGAAAAGAACAAACCT 63074 Score = 82.4 bits (90), Expect = 1e-10 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 |||||| |||||||| || | || || || ||||||||||| || |||| ||| || || Sbjct 65714 TTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTGCCCTCCAGTGAAATGTT 65655 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATT 33101 |||||||||||||| ||||| |||| || Sbjct 65654 CTCCATGAAATCAAAAGGATTACTAACCTT 65625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622779323516440