Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq9509 95.1 3e-14 seq5542 95.1 3e-14 >seq9509 Length=48202 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/227 (70%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 |||||| ||| || ||||| | | | | ||||| ||||| || ||||||||||| Sbjct 29070 TTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAG 29129 Query 22462 TGGAT-GA--ACAATG----AACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGT 22514 ||||| || |||| | | || || || |||||| | | || ||||| | || Sbjct 29130 TGGATCGACCACAAAGTAGCCAGGTACA---GC-GAACGTGTGGTAGCCTTTGCCGCTGT 29185 Query 22515 TGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAAT 22574 || ||||| || || || ||| ||||| ||||||||| ||||| || ||||||| | | Sbjct 29186 CGAGGGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATT 29245 Query 22575 TATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGG 22621 ||||| || || || || || || || | |||||| | ||||||| Sbjct 29246 AATGCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 29292 >seq5542 Length=71200 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/227 (70%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 |||||| ||| || ||||| | | | | ||||| ||||| || ||||||||||| Sbjct 64377 TTATTCAACGCCATCGAAACCATACCAGCTGTAAAGAAGAAGGCTGACTGGGCGCTGAAG 64436 Query 22462 TGGAT-GA--ACAATG----AACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGT 22514 ||||| || |||| | | || || || |||||| | | || ||||| | || Sbjct 64437 TGGATCGACCACAAAGTAGCCAGGTACA---GC-GAACGTGTGGTAGCCTTTGCCGCTGT 64492 Query 22515 TGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAAT 22574 || ||||| || || || ||| ||||| ||||||||| ||||| || ||||||| | | Sbjct 64493 CGAGGGCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAGAAACGTGGATT 64552 Query 22575 TATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGG 22621 ||||| || || || || || || || | |||||| | ||||||| Sbjct 64553 AATGCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 64599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302993581559138