Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq478 127 1e-24 seq5140 95.1 8e-15 seq4366 95.1 8e-15 seq584 95.1 8e-15 seq3904 84.2 1e-11 seq12331 82.4 5e-11 >seq478 Length=123072 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| | ||||||||||||||| || || ||||| Sbjct 24641 AAGCCCGTTCCCTTGGCTGTGGTTTCACCAGATAGTAGATAGGGACAGTGGGAACCTCGT 24582 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 24581 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24547 >seq5140 Length=69470 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 || || |||||||||| |||||||||||| ||||||||||||||| | | | | Sbjct 6288 CGTAAAACCAAATGAACAGTGCTCTCCTTACAAATATTGTAATCAGAAAGTGTTCTTCCA 6229 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 | ||||| ||||| || |||| ||||| || |||||||| || | |||| |||| Sbjct 6228 TGTTCTAACTGTTTACCTACAAAGATTAGCCGCTGTTGATCCATAGGAATTCCTTTTTTG 6169 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || |||||| || | ||| | | |||||| ||||||||| | | || Sbjct 6168 TCTTGAATTTTAAATTTTAAATTTTCAATGGTATCTGTCGGTTCAACTTCCAGAGATATT 6109 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||||| || | |||||||| || || |||| Sbjct 6108 GTTTTACCAGTTAGTGTTTTCACTAAAATTCGCAT 6074 >seq4366 Length=72505 Score = 95.1 bits (104), Expect = 8e-15 Identities = 81/100 (81%), Gaps = 10/100 (10%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA-----GTAGATAGGG-----GGTAAT 25951 ||||| |||||||||||||||||||| ||||| |||||||||| || || Sbjct 66413 AAGCCTGTTCCCTTGGCTGTGGTTTCATGAGATACAGTAGTAGATAGGGACAGTGGGAAC 66354 Query 25952 CTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||| ||||||| ||||||||||||||||||| Sbjct 66353 CTCGTTAATCCATTCATGCATGTCACTAATTAGATGACGA 66314 >seq584 Length=167246 Score = 95.1 bits (104), Expect = 8e-15 Identities = 81/100 (81%), Gaps = 10/100 (10%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA-----GTAGATAGGG-----GGTAAT 25951 ||||| |||||||||||||||||||| ||||| |||||||||| || || Sbjct 111341 AAGCCTGTTCCCTTGGCTGTGGTTTCATGAGATACAGTAGTAGATAGGGACAGTGGGAAC 111400 Query 25952 CTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||||| ||||||| ||||||||||||||||||| Sbjct 111401 CTCGTTAATCCATTCATGCATGTCACTAATTAGATGACGA 111440 >seq3904 Length=54149 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 5/66 (8%) Strand=Plus/Minus Query 25931 AGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGA 25985 ||||||||||||||| || || ||||||||||| |||||||||||||||||||||| Sbjct 52203 AGATAGTAGATAGGGACAGTGGGAACCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 52144 Query 25986 TGACGA 25991 |||||| Sbjct 52143 TGACGA 52138 >seq12331 Length=16912 Score = 82.4 bits (90), Expect = 5e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6326 GAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTT 6385 ||| | ||||||||| |||||||| ||||||||||| |||||| ||| || || || | Sbjct 480 GAAGTTTTTCGGGTGTGAACTTGGAGCTCAGACGCAATTTGATGTCAAGAATGACCGTTA 421 Query 6386 CATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCG 6445 ||| || || || || || || | ||||||| || || | || | | || || Sbjct 420 CATTGTGAATGGCTCACACGACAGTTCCAAGCTTCAAGAAATCCTGGCTGCATTCATCAT 361 Query 6446 CAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 ||||| || || || | || || ||||||||||| || || || Sbjct 360 TAAGTTCGTTCTTTGCCCTGATTGTGATAACCCGGAAACAGATCT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334859192518529