Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9509 118 1e-21 seq5542 118 1e-21 >seq9509 Length=48202 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| | Sbjct 27926 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 27867 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 27866 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 27807 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | || Sbjct 27806 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 27747 Query 33227 TGGAAAAATAACAAATCT 33244 || |||| |||||| || Sbjct 27746 AGGGAAAAGAACAAACCT 27729 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || ||||| | |||||| || || || || || ||||||| ||||| || | Sbjct 29292 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 29233 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||||||||| || || || || || || || || ||||||| Sbjct 29232 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 29173 Query 32803 CAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | | | || | || | || | ||| | |||||||| | ||||| || | Sbjct 29172 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 29113 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||||||| |||||| || || || || || || || || Sbjct 29112 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 29073 >seq5542 Length=71200 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 33047 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 33106 |||||| ||||| || |||||||||||||| || || || | |||||||| | ||| | Sbjct 63271 ATTTTCGTTCACGATGCCGTCACTGGCTGCGAAGAAAGCTAGAACATGTTTAACAAAGTG 63212 Query 33107 TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 | ||| | ||| | || | ||| || || |||||||| || | ||| || || || Sbjct 63211 CTGTTCTTGCGGTTTCAGCCCCTCCCAGTCCTTCATATCTTTTGAGAGATCGACCTCCTC 63152 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 ||||||| || || || |||||||| || ||||| |||| ||||| ||||| | || Sbjct 63151 GGCTGTCCAGAAAGAAGCTTCTGCCTTCTTGTACATTCTCCATATGTCCTGATACTCGAT 63092 Query 33227 TGGAAAAATAACAAATCT 33244 || |||| |||||| || Sbjct 63091 AGGGAAAAGAACAAACCT 63074 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || ||||| | |||||| || || || || || ||||||| ||||| || | Sbjct 64599 CCTCATCCCTGCTAATGAGTTCGTTAGAGAATGTAAGGCCTGGCATTAATCCACGTTTCT 64540 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||||||||| || || || || || || || || ||||||| Sbjct 64539 TGAGCCAGAAGATTGCAGCAAATGATCCTGAGAAAAAGATGCCCTCGACAGCGGCAAAGG 64480 Query 32803 CAATAAGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | | | || | || | || | ||| | |||||||| | ||||| || | Sbjct 64479 CTACCACACGTTCGCTGTACCTGGCTACTTTGTGGTCGATCCACTTCAGCGCCCAGTCAG 64420 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||||||| |||||| || || || || || || || || Sbjct 64419 CCTTCTTCTTTACAGCTGGTATGGTTTCGATGGCGTTGAA 64380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633461244096400