Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq863 93.3 4e-14 seq6761 89.7 4e-13 seq12334 87.8 2e-12 seq995 87.8 2e-12 >seq863 Length=118355 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/161 (75%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGT--AAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||||| ||||| ||| |||| ||||||||| | || || | ||||| || | | Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTT--ACCGGTAAAACAATAACTCTGGAAGTTGAACCAT 78394 Query 25057 CTGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | || || || || || || | |||| ||| ||||| ||||| ||||| ||||| Sbjct 78393 CAGATACCATTGATAACATAAAATCTAAAATTCAA-GACAAGGAAGGAATTCCTCCTGAT 78335 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 |||||| ||||||| ||||| || || || ||||||||||| Sbjct 78334 CAACAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGATGA 78294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| ||| | |||||| || ||||||||||||||||||| |||||| Sbjct 78586 GACAAGGAAGGAATTCCTCCTAATCAACAGAGGTTTATTTTTGCCGGCAAACAGTTAGAA 78527 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCA--AAAAGAATCCACGCTACATTTAGTGC 25209 ||| | || | || || |||||||| | |||| ||| | ||| ||||| Sbjct 78526 AATGGAAGAACACTTTCTGACTATAATATTCAGCAGAAGA--GCACTATTCATATAGTGT 78469 Query 25210 TAAGGCTAAGAGGAGG 25225 || |||| |||||||| Sbjct 78468 TACGGCTTAGAGGAGG 78453 >seq6761 Length=90290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||| | || || | || |||||| | || || | |||| | |||| Sbjct 70743 ATGCAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCA 70802 Query 25059 GACACTATCGAGTCACTGAAG--CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| | || || | ||| ||| ||||| ||||| ||||| ||||| | Sbjct 70803 GATACCATCGA-TAACGTAAAATCTCAAATTCAA-GACAAGGAAGGAATTCCTCCTGATC 70860 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGA 25156 ||||| ||||||||||||| || || || ||||||||||| Sbjct 70861 AACAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGATGA 70900 >seq12334 Length=23141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 |||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||| | Sbjct 1679 AGGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAG 1738 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || ||||| || || |||||||||||||| ||| | || || Sbjct 1739 GACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCT 1789 >seq995 Length=320003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 |||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||| | Sbjct 192402 AGGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAG 192461 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || ||||| || || |||||||||||||| ||| | || || Sbjct 192462 GACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCT 192512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433214142932585