Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12447 98.7 1e-15 seq3766 98.7 1e-15 seq9509 84.2 2e-11 seq5542 84.2 2e-11 >seq12447 Length=33603 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||| || || || || ||||| || |||| ||||||||| | ||| ||||| ||| Sbjct 24786 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 24727 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||||||| || || ||||||||||| || |||||| || ||||| ||||| Sbjct 24726 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGC 24673 >seq3766 Length=89028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93406 CTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGA 93465 |||||| || || || || ||||| || |||| ||||||||| | ||| ||||| ||| Sbjct 53995 CTCCATAGCTATCTGAAAGCCGTAAAAGCATCGAGCTTCCGTAACCTGAACTTCCTGACT 54054 Query 93466 AAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||||||||| || || ||||||||||| || |||||| || ||||| ||||| Sbjct 54055 AAATCTCTCCACCAGGTTTTCATTGACGATTCCATCGCTGGCCGCAAAGAAAGC 54108 >seq9509 Length=48202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 |||||| | ||||| | | ||| |||||||||||||| || |||| |||||| || Sbjct 29264 GAATGTAAGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAGATTGCAGCAAATGATCC 29205 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || ||||| || || || || || ||||| || || | |||||| || | || | Sbjct 29204 TGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCTACCACACGTTC-GCTGTACCTGGCTA 29146 Query 93262 ATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || || | |||||| || | ||||| || || || ||||| | | |||| |||| Sbjct 29145 CTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCCTTCTTCTTTACAGCTGGTATGGTTT 29086 Query 93321 CGATAGCGTTAAATA 93335 |||| ||||| |||| Sbjct 29085 CGATGGCGTTGAATA 29071 >seq5542 Length=71200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 |||||| | ||||| | | ||| |||||||||||||| || |||| |||||| || Sbjct 64571 GAATGTAAGGCCTGGCATTAATCCACGTTTCTTGAGCCAGAAGATTGCAGCAAATGATCC 64512 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || ||||| || || || || || ||||| || || | |||||| || | || | Sbjct 64511 TGAGAAAAAGATGCCCTCGACAGCGGCAAAGGCTACCACACGTTC-GCTGTACCTGGCTA 64453 Query 93262 ATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || || | |||||| || | ||||| || || || ||||| | | |||| |||| Sbjct 64452 CTTTGTGGTCGATCCACTTCAGCGCCCAGTCAGCCTTCTTCTTTACAGCTGGTATGGTTT 64393 Query 93321 CGATAGCGTTAAATA 93335 |||| ||||| |||| Sbjct 64392 CGATGGCGTTGAATA 64378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556710732975160