Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq863 120 3e-22 seq2947 116 3e-21 seq5140 104 2e-17 seq6761 93.3 4e-14 seq12334 86.0 5e-12 seq995 86.0 5e-12 >seq863 Length=118355 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||| | ||||||||||| | ||||| ||||| ||| | | Sbjct 78451 ATGCAAATTTTTGTGAAAAAACTTACCGGTAAAACAATAACTCTGGAAGTTGAACCATCA 78392 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | || ||| ||||||||||||||||| || ||||| || |||||| Sbjct 78391 GATACCATTGATAACATAAAATCTAAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 78332 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || | |||| ||||| || || |||||||| ||| Sbjct 78331 CAGAGGATTATCTTTGCAGGTAATCAGTTAGAAGAT 78296 >seq2947 Length=87168 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| |||||| | || || || || |||| ||||| || ||| | | Sbjct 53160 ATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACCCTTGAGGTAGAACCAAGT 53101 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| ||||| || |||||||| ||||||||||| || || Sbjct 53100 GACACCATCGAGAATGTCAAATCCAAAATCCAGGACAAGGAAGGTATTCCACCAGACCAG 53041 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | ||||| | || | ||||| |||||| Sbjct 53040 CAGCGTCTCATCTTTGCTGGTAAGCAGCTCGAGGACGGAAGAACGTTATCCGACTACAAC 52981 Query 22399 ATTCAAAAAGAATCCAC 22415 || || ||||| ||||| Sbjct 52980 ATCCAGAAAGAGTCCAC 52964 >seq5140 Length=69470 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||| |||||| || ||||| |||| |||||||| | |||| ||||| ||| | || Sbjct 6074 ATGCGAATTTTAGTGAAAACACTAACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6133 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| |||||||||||||| | || ||||| |||||| Sbjct 6134 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAAAAGGAATTCCTATGGATCAA 6193 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || |||| || ||||||||||| || | || | || |||||||| Sbjct 6194 CAGCGGCTAATCTTTGTAGGTAAACAGTTAGAACATGGAAGAACACTTTCTGATTACAAT 6253 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||| || || ||| | ||||| ||||| || Sbjct 6254 ATTTGTAAGGAGAGCACTGTTCATTTGGTTTTACG 6288 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| || ||| |||| | ||||| ||||| ||| | || Sbjct 5390 ATGCAAATTTTAGTGAAAACACCTACTGGTGAAACATTAACTCTGGAAGTTGAACCAACA 5449 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| || | || || | ||| | ||||||||||| |||| ||||| || |||||| Sbjct 5450 GATGCCATTGAAAATGTAAAATCTATGATTCAAGACAAAAAGGGAATTCCTCCGGATCAA 5509 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || ||||||| ||| || || | || ||||||| Sbjct 5510 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGACAAAACACTTTCTAGTTACAAC 5569 Query 22399 ATT 22401 ||| Sbjct 5570 ATT 5572 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| | || ||||| || |||||||| | |||| ||||| ||| | || Sbjct 6302 ATGCAAATGATAGTGAAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGACA 6361 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| |||||||||||||| || || ||||| | |||||| Sbjct 6362 GATACCATTGAAAATTTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGGATCAA 6421 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || | ||||| ||||| || || ||||||| ||| Sbjct 6422 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGAT 6457 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||| ||||| || |||| ||| ||||||| ||||| ||| | | Sbjct 7214 ATGCAAATTTTTGCGAAAACACCTACTGGTAGAACAATCACTCTAGAAGTTGAACCATCA 7273 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||||||||||||| || |||| ||||||||| Sbjct 7274 CATACCATTGAAAACGTAAAATTAAAAATTCAAGACAAGGAAGGAATTCTTCCCGATCAA 7333 Query 22339 CAACGTCTTATATTT 22353 ||| | ||| | ||| Sbjct 7334 CAAAGGCTTGTCTTT 7348 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || |||| ||| |||| ||||| ||| | | Sbjct 6530 ATGCAAATTTTAGTGAAAACACTTACTGGTAGAACAACATCTCTGGAAGTTGAACCATCA 6589 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || ||| ||||||| || || ||||| || |||||| Sbjct 6590 GATACCATTGAGAACGTAAAATCTAAGATTGAAGACAAAGAAGGAATTCCTCCTGATCAA 6649 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 || | ||||| ||||| || | ||||||||| ||| || Sbjct 6650 CAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGATGAC 6688 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||| | | |||||||| | |||| || || ||| | Sbjct 6986 ATGCAAATTTTAGTAGAAACACTTTCTGGTAAAACAATATCTCTGGACGTTGAACTGTCA 7045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || ||||||||||| || || ||||| || |||||| Sbjct 7046 GATACCATTGAAAATGTAAAATCTAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAA 7105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 || | ||||| ||||| || | ||||||||| ||| || Sbjct 7106 CAGCTGCTTATCTTTGCAGGTAGACAGTTAGAAGATGAC 7144 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || ||| |||| | || || ||||| ||| | | Sbjct 5846 ATGCAAATTTTAGTGAAAACACTTACTGGTGAAACATTAACGCTGGAAGTTGAACCGTCA 5905 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| | ||||||||||| || | ||||| | |||||| Sbjct 5906 GATACCATTGAAAATGTAAAATCTATGATTCAAGACAAAGAAAGAATTCCTACGGATCAA 5965 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || || ||||||| ||| | || | || |||||||| Sbjct 5966 CAGCAGCTTATCTTTGCAGGTAAGAAGTTAGAAGATGGAAGAACACTTTCTAATTACAAC 6025 Query 22399 ATT 22401 ||| Sbjct 6026 ATT 6028 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||||||||| || ||||| || ||| |||| | ||||| |||| ||| | | | Sbjct 5619 TGCAAATTTTAGTGAAAACACCTACTGGTGAAACATTAACTCTGAAAGTTGAACCGTCAG 5678 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 ||||| | || | | ||| |||||||||||||| || || ||||| | |||||| Sbjct 5679 ATACCATTGAAAAAGTAAAATTTAAAATTCAAGACAAAGAAGGAATTCCTACGAATCAAC 5738 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 | || || || |||| || ||| ||||||| || | || | || |||||||||| Sbjct 5739 AGCGGCTAATCTTTGTAGGTAAAAAGTTAGAACATGGAAGAACACTTTCTGATTACAACA 5798 Query 22400 TT 22401 || Sbjct 5799 TT 5800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||| || |||||||| | |||| ||||| ||| | | Sbjct 6758 ATGCAAATTTTCGTGGAAACACCTACTGGTAAAACAATATCTCTGGAAGTTGAACCGTCA 6817 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || ||||||||||| | || ||||| || ||||| Sbjct 6818 GATACCATTGAAAACTTAAAATCTAAGATTCAAGACAAAGCAGGAATTCCTCCTCATCAA 6877 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCAC 22377 || | ||||| ||||| || | ||||||||| ||| || Sbjct 6878 CAGCAGCTTATCTTTGCAGGTAGACAGTTAGAAGATGAC 6916 >seq6761 Length=90290 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||| | ||||| | || |||||||| | ||||| |||| | | | | Sbjct 70743 ATGCAAATATTTATGAAAACACTTACTGGTAAAACAATAACTCTGCAAGTTGTACCGTCA 70802 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| |||||||||||||||| || ||||| || |||||| Sbjct 70803 GATACCATCGATAACGTAAAATCTCAAATTCAAGACAAGGAAGGAATTCCTCCTGATCAA 70862 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 || | |||| ||||| || || |||||||| ||| Sbjct 70863 CAGAGGATTATTTTTGCAGGTAATCAGTTAGAAGAT 70898 >seq12334 Length=23141 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || |||||||| || ||||| |||||||| ||||| |||||||| | || ||| | Sbjct 1680 GGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAGG 1739 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| |||| || |||||||| || ||||||||||| | ||| | || ||||| | || Sbjct 1740 ACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCTGCGACTCCGT 1799 Query 22441 GGAGG 22445 || || Sbjct 1800 GGTGG 1804 >seq995 Length=320003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || |||||||| || ||||| |||||||| ||||| |||||||| | || ||| | Sbjct 192403 GGGATTCCACCAGACCAACAGCGTCTTATCTTTGCGGGCAAACAACTTGAAGATGGGAGG 192462 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| |||| || |||||||| || ||||||||||| | ||| | || ||||| | || Sbjct 192463 ACCCTCTCAGACTACAACATCCAGAAAGAATCCACGCTCCATCTGGTCCTGCGACTCCGT 192522 Query 22441 GGAGG 22445 || || Sbjct 192523 GGTGG 192527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419617716336835