Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7425 91.5 3e-13 seq2624 91.5 3e-13 seq9916 89.7 1e-12 seq2490 89.7 1e-12 seq6843 87.8 4e-12 seq14002 86.0 1e-11 seq3298 86.0 1e-11 seq3039 86.0 1e-11 >seq7425 Length=32169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 14466 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 14525 Query 142114 CCGCCAG 142120 ||||||| Sbjct 14526 CCGCCAG 14532 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 16962 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 17021 Query 142114 CCGCCAG 142120 ||||||| Sbjct 17022 CCGCCAG 17028 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/67 (91%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 19209 CTCTGTGGCGCAATCGGATAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 19268 Query 142114 CCGCCAG 142120 ||||||| Sbjct 19269 CCGCCAG 19275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/88 (83%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 142034 AAGTGGGCATTAAACGCATGTCTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATC 142092 ||||| ||||| || || | |||||||||||| ||| ||||| ||||||||||||| Sbjct 9375 AAGTGATAATTAAGCG--TGCCCCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATT 9432 Query 142093 CAAAGGTTGCGGGTTCGACCCCCGCCAG 142120 |||||||||||||||||| |||| ||| Sbjct 9433 CAAAGGTTGCGGGTTCGAGTCCCGTCAG 9460 Score = 86.0 bits (94), Expect = 1e-11 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113 |||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||| | Sbjct 18514 CTCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTTGCGGGTTCGAGTC 18573 Query 142114 CCGCCAG 142120 ||| ||| Sbjct 18574 CCGTCAG 18580 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/80 (85%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 142042 ATTAAACGCATGTCTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTT 142100 || ||||| || | |||||||||||| ||| ||||| ||||||||||||| |||||||| Sbjct 9127 ATAAAACG--TGCCCCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATTCAAAGGTT 9184 Query 142101 GCGGGTTCGACCCCCGCCAG 142120 |||||||||| |||| ||| Sbjct 9185 GCGGGTTCGAGTCCCGTCAG 9204 >seq2624 Length=79618 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 20517 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 20576 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 20577 AGCCCCACGTTGGGC 20591 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 21273 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 21332 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 21333 AGCCCCACGTTGGGC 21347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 20009 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 20068 Query 142565 CCACATCGGGC 142575 |||| | |||| Sbjct 20069 CCACGTTGGGC 20079 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 20676 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 20735 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 20736 AGCCCCAC 20743 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||| ||||| Sbjct 20260 ATCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGTGTTCG 20319 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 20320 AGCCCCACGTTGGGC 20334 >seq9916 Length=69586 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 56545 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 56486 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 56485 CCCACGTTGGGC 56474 >seq2490 Length=76530 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 69566 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 69625 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 69626 CCCACGTTGGGC 69637 >seq6843 Length=60558 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 7098 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 7157 Query 142563 CCCCACATCGGGC 142575 ||| |||||||| Sbjct 7158 TCCCTCATCGGGC 7170 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 5525 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 5466 Query 142563 CCCCACATCGGG 142574 ||| ||||||| Sbjct 5465 TCCCTCATCGGG 5454 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 5750 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 5691 Query 142563 CCCCACATCGGG 142574 ||| ||||||| Sbjct 5690 TCCCTCATCGGG 5679 >seq14002 Length=5799 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| Sbjct 1690 AGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCGCGGGTTCGAG 1749 Query 142563 CCCCACATCGGGCAG 142577 ||| ||||||| || Sbjct 1750 TCCCTCATCGGGTAG 1764 >seq3298 Length=100720 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 142494 TGGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 || |||| |||||||||||||||||||||||||| ||||| ||||||| |||| | Sbjct 42529 TGCTGAGCAAGCCCGGTTAGCTCAGTCGGTAGAGCATCAGACTTTTAATCTGAGGGTCAT 42470 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 |||||| || |||| ||||||| Sbjct 42469 GGGTTCAAGTCCCATATCGGGC 42448 >seq3039 Length=64721 Score = 86.0 bits (94), Expect = 1e-11 Identities = 73/88 (83%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 142034 AAGTGGGCATTAAACGCATGTCTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATC 142092 ||||| ||||| || || | |||||||||||| ||| ||||| ||||||||||||| Sbjct 36385 AAGTGATAATTAAGCG--TGCCCCTGTGGCGCAATCGGAAAGCGCATTGGACTTCTAATT 36328 Query 142093 CAAAGGTTGCGGGTTCGACCCCCGCCAG 142120 |||||||||||||||||| |||| ||| Sbjct 36327 CAAAGGTTGCGGGTTCGAGTCCCGTCAG 36300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027552886101119