Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2947 150 3e-31 seq863 113 8e-20 seq6761 111 3e-19 seq3394 98.7 2e-15 seq2470 98.7 2e-15 seq12334 96.9 6e-15 seq995 96.9 6e-15 seq5140 95.1 2e-14 >seq2947 Length=87168 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || ||||| | || || || || || | Sbjct 52953 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGA 53012 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| || || || ||||| | || ||||| |||||||| ||||||||||| || | Sbjct 53013 GCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 53072 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || | ||||| |||||||||||| || |||||| || | ||||||||| || | Sbjct 53073 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGC 53132 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| || |||||||| Sbjct 53133 CAGTCAGAGTTTTGACAAAGATCTGCAT 53160 Score = 150 bits (166), Expect = 3e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || ||||| | ||| || || || |||| Sbjct 53181 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTA 53240 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 || || || ||||| ||||| | || ||||| || ||||| ||||||||||| || | Sbjct 53241 GTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGA 53300 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || | ||||| |||||||||||| || |||||| || | ||||||||| || | Sbjct 53301 TTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGC 53360 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || ||||| || |||||||| Sbjct 53361 CAGTCAGTGTTTTGACAAAGATCTGCAT 53388 >seq863 Length=118355 Score = 113 bits (124), Expect = 8e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 || ||| ||| || || | ||||| || || ||||| || ||||||||||||| || Sbjct 78252 AGAGTGCTCTCCTTCTGAACATTATAGTCAGAAAGTGTTCTTTCATCTTCTAACTGATTA 78311 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || | || ||||| || || ||||| ||||||||||||||||| || | Sbjct 78312 CCTGCAAAGATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATTTTAGAT 78371 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | | || ||||| |||| || ||| ||||||| || || ||||| || || || Sbjct 78372 TTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTATTGTTTTACCGGTAAGT 78431 Query 68442 GTCTTGACGAATATCTGCAT 68461 | || || || || ||||| Sbjct 78432 TTTTTCACAAAAATTTGCAT 78451 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/146 (74%), Gaps = 5/146 (3%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTT--TGGATGTTATAATCGG 68292 ||||| | ||| || || || | || | ||| ||||| | || || ||||| || | Sbjct 78453 CCTCCTCTAAGCCGTAACACTATATGAATAGTG--CTCTTCTGCTGAATATTATAGTCAG 78510 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | ||||| || |||| ||||||||| || ||||| || || | || ||||| | || | Sbjct 78511 AAAGTGTTCTTCCATTTTCTAACTGTTTGCCGGCAAAAATAAACCTCTGTTGATTAGGAG 78570 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTT 68378 |||| |||||||||||||||| |||| Sbjct 78571 GAATTCCTTCCTTGTCTTGAA-CTTT 78595 >seq6761 Length=90290 Score = 111 bits (122), Expect = 3e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||| ||| || || | ||||| || || ||||| || ||||||||| Sbjct 70950 CAAGATGCAGAGTGCTCTCGTTCTGTACATTATAGTCAGAAAGTGTTCTTTCATCTTCTA 70891 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||| || || || || || | || ||||| || || ||||| |||||||||||||||| Sbjct 70890 ACTGATTACCTGCAAAAATAATCCTCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 70831 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | | | || ||| |||||||| |||| | | | |||| || || || ||||| | Sbjct 70830 TTTGAGATTTTACGTTATCGATGGTATCTGACGGTACAACTTGCAGAGTTATTGTTTTAC 70771 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || || || | ||||| ||||| Sbjct 70770 CAGTAAGTGTTTTCATAAATATTTGCAT 70743 >seq3394 Length=72516 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| |||||||| | |||||| ||||||||| || | | ||| || || Sbjct 11919 CCTTCCTTGTCCTGAATCTTGGACTTGACATTCTCGATGGTATCCGAGGGTTCCACCTCA 11978 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| |||||||| || || |||||||| Sbjct 11979 AGGGTGATGGTTTTCCCCGTAAGGGTCTTTACAAAGATCTGCAT 12022 >seq2470 Length=135016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 97/124 (78%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||||||||||| |||||||| || ||||| | || || || ||||| | Sbjct 94239 CAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCTTCAA 94298 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| || ||||| ||||| | || ||||| |||||||| ||||||||||| || | Sbjct 94299 GTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA 94358 Query 68374 TCTT 68377 | || Sbjct 94359 TTTT 94362 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || |||||||| ||||||||||| || || || | ||||| |||||||||||| | Sbjct 94881 TCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTT 94940 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || | ||||||||| || || || || || ||||| || |||||||| Sbjct 94941 GGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 94996 >seq12334 Length=23141 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| || |||||||| ||||| |||||||| || || ||| Sbjct 1804 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 1745 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||||||||||||| | || || || || || || || | |||||||| |||||| Sbjct 1744 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGA 1685 Query 68355 ATGCCT 68360 || ||| Sbjct 1684 ATCCCT 1679 >seq995 Length=320003 Score = 96.9 bits (106), Expect = 6e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||| || |||||||| ||||| |||||||| || || ||| Sbjct 192527 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 192468 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||||||||||||| | || || || || || || || | |||||||| |||||| Sbjct 192467 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGA 192408 Query 68355 ATGCCT 68360 || ||| Sbjct 192407 ATCCCT 192402 >seq5140 Length=69470 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGA--TGTTATAATCGGAGAGTGTCC 68301 || || || ||||| || | ||| ||||| || || |||| |||| || ||||| | Sbjct 6063 AGCCGTAACACCAAATGAACAGTG--CTCTTATTCGAAATGTTGTAATTAGAAAGTGTTC 6006 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 | ||||||||||||| ||| || || || || || ||||| || | ||||| | || Sbjct 6005 TTCCATCTTCTAACTTCTTACCTGCAAAGATAAGCTGCTGTTGATCCGTAGGAATTCTTT 5946 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 | |||||||||||| | | || || || ||||| |||| | ||| ||||||| | Sbjct 5945 CTTTGTCTTGAATCATAGATTTTACATTTTCAATGGTATCTGACGGTTCAACTTCCAGCG 5886 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | |||| || || || || || || || || ||||| Sbjct 5885 TTAATGTTTCACCAGTAAGTGTTTTCACTAAAATTTGCAT 5846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || ||||| || | ||| |||||| || || ||| || ||||| | Sbjct 6747 AGCCGTAACACCAACTGAACAGTGCTCTCTTTACAAATTTTGTAACTAGAAAGTGTTTTG 6688 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||||||||||| | || || || || || ||||| || || ||||| ||||| Sbjct 6687 TCATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGAGGAATTCCTTCT 6628 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCA-AGGT 68422 ||||||| |||||| | || ||| ||| ||||| |||| || ||| ||||||| || | Sbjct 6627 TTGTCTTCAATCTTAGATTTTACGTTCTCAATGGTATCTGATGGTTCAACTTCCAGAGAT 6568 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | ||| | || || || || || || || || ||||| Sbjct 6567 G-TTGTTCTACCAGTAAGTGTTTTCACTAAAATTTGCAT 6530 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || ||| ||| || || || ||||| || || ||||| | |||||||| | Sbjct 7424 CAAGATGCAGAGTGCTCTCCTTCTGTATATTATAGTCAGAAAGTGTTGTTCCATCTTCGA 7365 Query 68314 ACTGCTTCCCGGCG---AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370 || ||| | | || | || |||||||| ||||| |||| ||||||||||||| Sbjct 7364 ACAGCTGACGACCTTTAAAGACAAGCCTTTGTTGATCGGGAAGAATTCCTTCCTTGTCTT 7305 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 |||| ||| || ||| || ||||| | || || ||| ||||| | ||||| ||| Sbjct 7304 GAATTTTTAATTTTACGTTTTCAATGGTATGTGATGGTTCAACTTCTAGAGTGATTGTTC 7245 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | || || | || || ||||| Sbjct 7244 TACCAGTAGGTGTTTTCGCAAAAATTTGCAT 7214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921374034283480