Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2947 114 1e-20 seq12334 84.2 2e-11 seq5140 84.2 2e-11 seq2470 84.2 2e-11 seq995 84.2 2e-11 >seq2947 Length=87168 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| || |||||||| ||| Sbjct 53159 ATACCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCG 53218 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | || || ||||||||||||||| ||||||||||||| ||||| || Sbjct 53219 GATAATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGGTCTGGG 53278 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| || || ||| | | || | |||||| | | ||| Sbjct 53279 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 53338 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||| ||||| ||||| ||||| ||||||||| Sbjct 53339 ACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCATG 53389 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| | || | || || || || |||||| Sbjct 52964 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTGCTTACCA 53023 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| ||||| || ||||| ||||| ||||| || || ||| Sbjct 53024 GCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTGGATTTG 53083 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||| || || | ||| | || ||||| ||||||||| Sbjct 53084 ACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTT 53143 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 53144 TTGACAAAGATCTGCAT 53160 >seq12334 Length=23141 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||| || || | ||| | ||| |||||||| || |||||||| || Sbjct 1804 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 1745 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | ||||||||||||||| || || |||| |||||||||||||| || ||| Sbjct 1744 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGA 1685 Query 114276 ATGCCT 114281 || ||| Sbjct 1684 ATCCCT 1679 >seq5140 Length=69470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| |||| || |||| || ||||||| || |||||||| |||||||| Sbjct 7141 ATCTTCTAACTGTCTACCTGCAAAGATAAGCAGCTGTTGATCAGGAGGAATTCCTTCTTT 7082 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| ||||| | ||||| ||| || | ||| ||||||| | | Sbjct 7081 GTCTTGAATCTTAGATTTTACATTTTCAATGGTATCTGACAGTTCAACGTCCAGAGATAT 7022 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || | || |||| ||| ||||| ||||| Sbjct 7021 TGTTTTACCAGAAAGTGTTTCTACTAAAATTTGCAT 6986 >seq2470 Length=135016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| ||| | || | ||||||||||| |||||| Sbjct 94250 GTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCTTCAAGTTGCTTACCA 94309 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| ||||||||||||| ||||| || ||||| ||||| ||||| Sbjct 94310 GCGAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTC 94353 >seq995 Length=320003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||| || || | ||| | ||| |||||||| || |||||||| || Sbjct 192527 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 192468 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || | ||||||||||||||| || || |||| |||||||||||||| || ||| Sbjct 192467 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTGGTCTGGTGGA 192408 Query 114276 ATGCCT 114281 || ||| Sbjct 192407 ATCCCT 192402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420024009555108