Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9509 141 2e-28 seq5542 141 2e-28 seq1416 104 4e-17 >seq9509 Length=48202 Score = 141 bits (156), Expect = 2e-28 Identities = 168/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||| ||||| || || || || ||| | ||||||||||| ||||||||||| || | Sbjct 29073 TTCAACGCCATCGAAACCATACCAGCTGTA--AAGAAGAAGGCTGACTGGGCGCTGAAGT 29130 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||||| | || | || | |||| | ||||||||||| |||| ||||||| Sbjct 29131 GGATCGACCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAGG 29190 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGAT 42787 ||||||| ||||| || | || || | ||||||||||||||| || ||| | || Sbjct 29191 GCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAG--AAACGTGGATTAAT 29248 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || || || ||||| ||||||||||| |||||||| |||| Sbjct 29249 GCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 29292 >seq5542 Length=71200 Score = 141 bits (156), Expect = 2e-28 Identities = 168/224 (75%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||| ||||| || || || || ||| | ||||||||||| ||||||||||| || | Sbjct 64380 TTCAACGCCATCGAAACCATACCAGCTGTA--AAGAAGAAGGCTGACTGGGCGCTGAAGT 64437 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||||| | || | || | |||| | ||||||||||| |||| ||||||| Sbjct 64438 GGATCGACCACAAAGTAGCCAGGTACAGCGAACGTGTGGTAGCCTTTGCCGCTGTCGAGG 64497 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG--TCGAT 42787 ||||||| ||||| || | || || | ||||||||||||||| || ||| | || Sbjct 64498 GCATCTTTTTCTCAGGATCATTTGCTGCAATCTTCTGGCTCAAG--AAACGTGGATTAAT 64555 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || || || ||||| ||||||||||| |||||||| |||| Sbjct 64556 GCCAGGCCTTACATTCTCTAACGAACTCATTAGCAGGGATGAGG 64599 >seq1416 Length=111358 Score = 104 bits (114), Expect = 4e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCAC 244975 |||| | ||| ||||| ||||| ||||| | ||| || ||||| || ||| Sbjct 37009 TACAACGTCTCAAACTCTTCCCCCCAAACCTCATGTAGTCCTGGGCATTCATGGGGACAC 36950 Query 244976 ATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGG 245035 || || |||| ||||| | | ||| |||| |||||||||||| || ||||| ||| Sbjct 36949 ATCAGGGTCCAATCGCCATTCTGTTCGACTCTCTTCATGAAGAGGTCTGGAATCCATAGG 36890 Query 245036 GCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAA 245094 || | ||||||||||||| || || || ||| ||| ||| ||||| | ||||| Sbjct 36889 GCATAAAAGAGGTCCCTGGCTCTTTGTTCTTCCTTGCC-GTGATTCTTTTTGCAATCCAA 36831 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||| || ||||||| ||||||| ||||||| ||| | |||| Sbjct 36830 AAATTCGTAGACGTCCGCGTGCCACGGCTCCAAGTAAATTGCGA 36787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944084712389840