Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2947 150 4e-31 seq2470 98.7 2e-15 seq2063 87.8 4e-12 seq12334 86.0 1e-11 seq995 86.0 1e-11 >seq2947 Length=87168 Score = 150 bits (166), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 53162 CCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGAT 53221 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | |||||| |||| |||||| || |||||||| |||||||| || |||||| Sbjct 53222 AATGTTCTTCCGTCCTCTAGTTGTTTACCAGCGAAGATGAGACGCTGCTGG---TCTGGG 53278 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||||||||| | ||| || || || || | || || | |||| Sbjct 53279 GGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCT 53338 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 53339 ACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 53388 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 52933 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 52992 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | |||||| || | || || || || ||||| |||||||| || ||| Sbjct 52993 TAACGTTCTTCCGTCCTCGAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGG 53052 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||| || ||||||||||| | ||| || || || || | || || | |||||| Sbjct 53053 AATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTCTAC 53112 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||||||| ||||| || |||||||| Sbjct 53113 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 53160 >seq2470 Length=135016 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | ||| || ||||| | ||| ||||| ||||| || ||||||| Sbjct 94219 TCCACCACGGAGACGAAGGACAAGATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGA 94278 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||| | ||||||||| | ||| || || |||||||| |||||||| || ||| Sbjct 94279 TAACGTTCTTCCGTCTTCAAGTTGCTTACCAGCGAAGATGAGACGCTGCTGGTCTGGTGG 94338 Query 288366 GATTCCTTCTTTATCCTGGATTTT 288389 || ||||| || ||||||||||| Sbjct 94339 AATACCTTCCTTGTCCTGGATTTT 94362 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| || ||||| || ||||||||||| | ||| || || || || | || || | ||| Sbjct 94886 TGGAATACCTTCCTTGTCCTGGATTTTGGATTTGACATTCTCGATGGTGTCACTTGGTTC 94945 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||| ||||| || ||||| || ||||| || |||||||| Sbjct 94946 TACCTCAAGGGTGATGGTCTTGCCAGTCAGTGTTTTGACAAAGATCTGCAT 94996 >seq2063 Length=101605 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | |||||||||||||||| |||||| ||||| Sbjct 42175 CCACCAGGTAGACGAAGCACAAGATGGAATGTGCTTTCTTTTTGGACATTATAATCGGCT 42116 Query 288307 AGCGT----GCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | || | ||| ||| || | |||| ||| | || || || |||| || | Sbjct 42115 AATGTTTTGGTGTCAGTCAGGTA----TCTTCCCGCGTAAATGAGCCGTTGTTCAGCCAC 42060 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| || ||||| |||| | ||||||| | || || | || || | ||| | | Sbjct 42059 TGGTATCCCTTCCCTATCTTCGATTTTCCCCTTGACATCTTGTACTGTATCTTCGGGGCC 42000 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || | | ||||||||||||| || || | || |||||||| ||| || Sbjct 41999 TACCTCAATCTTGATCGTCTTCCCTGTAAGCATTTTCACGAATATTTGCGTT 41948 >seq12334 Length=23141 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || ||||| | |||| |||||| ||||| || ||||| | | Sbjct 1804 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 1745 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || || | || ||||| | |||||| || || ||||| ||||||||||| Sbjct 1744 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTG 1695 >seq995 Length=320003 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || ||||| | |||| |||||| ||||| || ||||| | | Sbjct 192527 CCACCACGGAGTCGCAGGACCAGATGGAGCGTGGATTCTTTCTGGATGTTGTAGTCTGAG 192468 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTG 288356 || || | || ||||| | |||||| || || ||||| ||||||||||| Sbjct 192467 AGGGTCCTCCCATCTTCAAGTTGTTTGCCCGCAAAGATAAGACGCTGTTG 192418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179328550332002