Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2947 111 2e-19 seq4098 107 2e-18 seq5570 93.3 5e-14 seq9152 91.5 2e-13 seq5193 91.5 2e-13 seq2351 91.5 2e-13 >seq2947 Length=87168 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| | |||| ||| || || || ||||| || | | || | |||| || ||||| Sbjct 52957 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAACGTTCTTCCGTCCTCGAGCTG 53016 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||||||| || ||||| ||||||||||| | ||| | | ||||||||| |||||| Sbjct 53017 CTTACCAGCAAAGATGAGACGCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTT 53076 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 ||||| || | | ||||| || | ||| || || | |||||||| ||||| || Sbjct 53077 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 53136 Query 42185 TAGCGTCTTTACAAAGATTTGCAT 42208 || || || |||||||| ||||| Sbjct 53137 CAGAGTTTTGACAAAGATCTGCAT 53160 Score = 107 bits (118), Expect = 2e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||| | |||| ||| || || || ||||| || | | || | |||| ||||| || Sbjct 53185 ATGGAGTGTGGACTCTTTCTGGATGTTGTAGTCGGATAATGTTCTTCCGTCCTCTAGTTG 53244 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||||||||||| ||||| ||||||||||| | || | | ||||||||| |||||| Sbjct 53245 TTTACCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGGATTTT 53304 Query 42125 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 42184 ||||| || | | ||||| || | ||| || || | |||||||| ||||| || Sbjct 53305 GGATTTGACATTCTCGATGGTGTCACTTGGTTCTACCTCAAGGGTGATGGTCTTGCCAGT 53364 Query 42185 TAGCGTCTTTACAAAGATTTGCATTTT 42211 || || || |||||||| ||||| || Sbjct 53365 CAGTGTTTTGACAAAGATCTGCATGTT 53391 >seq4098 Length=55407 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| |||||||||| | |||||||||| ||||| |||||||||||||||| |||| Sbjct 29178 AAATATTGTCTCCTCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 29119 Query 57058 TCACCACTATACTACCGAGGAT 57079 ||||||||||||||||| |||| Sbjct 29118 TCACCACTATACTACCGGGGAT 29097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37178 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37119 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 37118 TACTACCGAGGA 37107 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37323 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37264 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 37263 TACTACCGAGGA 37252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37508 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37449 Query 57067 TACTACCGAGGA 57078 ||||||||||| Sbjct 37448 AACTACCGAGGA 37437 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 37697 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 37638 Query 57067 TACTACCGAGGA 57078 |||| ||||||| Sbjct 37637 TACTTCCGAGGA 37626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| | ||| |||||||||||||||| ||||||||||||| Sbjct 39157 CTCCCCGGCGGGGAATCGAACCCCGTTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 39098 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 39097 TACTACCGAGGA 39086 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||||||||| ||| ||| ||||||| ||||||||||||| Sbjct 39869 CTCCCCGGCGGGGAATCGAACCCTGGTCTTTCGCATGATAGGCGGAGATACTCACCACTA 39810 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 39809 TACTACCGAGGA 39798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| ||| ||||||||||| ||||||||||||| Sbjct 28732 CTCCCCGGCGGGGAATCGAACCCCGGTCTTCCG--TGACAGGCGGAGATACTCACCACTA 28675 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 28674 TACTACCGAGGA 28663 >seq5570 Length=84168 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| | || | |||||||||| ||||| |||||||||||||||| |||||| ||||| Sbjct 73756 TCTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACT 73815 Query 57066 ATACTACCGAGGATTG 57081 ||||||| |||||||| Sbjct 73816 ATACTACTGAGGATTG 73831 >seq9152 Length=42681 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | |||||||||| ||||| |||||||||||||||| |||||| |||||| Sbjct 39411 CTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACTA 39352 Query 57067 TACTACCGAGGATTG 57081 |||||| |||||||| Sbjct 39351 TACTACTGAGGATTG 39337 >seq5193 Length=60789 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 45324 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 45383 Query 57067 TACTACCGAGGAT 57079 ||||||| ||||| Sbjct 45384 TACTACCAAGGAT 45396 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 45469 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 45528 Query 57067 TACTACCGAGGAT 57079 ||||||| ||||| Sbjct 45529 TACTACCAAGGAT 45541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | |||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct 48413 CTCCCTGGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 48472 Query 57067 TACTACCGAGGAT 57079 ||||||| ||||| Sbjct 48473 TACTACCAAGGAT 48485 >seq2351 Length=64399 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| | || | |||||||||| ||||| |||||||||||||||| |||||| |||||| Sbjct 15778 CTCCCCAGCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCTCCACTA 15719 Query 57067 TACTACCGAGGATTG 57081 |||||| |||||||| Sbjct 15718 TACTACTGAGGATTG 15704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543066410940560