Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apostichopus_20parvimensis_20[genbank_20GCA_5F000934455.1_202015-02- 27] 21,559 sequences; 873,088,235 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1416 82.4 7e-11 seq863 82.4 7e-11 >seq1416 Length=111358 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||| | ||| ||||| || ||||||||||| |||||||||||||| || || || ||| Sbjct 37341 ATTCTGGAAGCACAAACGGAGACCGGAACGCCATACATGCTCTACAAGGATGCTTGTAAC 37400 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTG 123697 ||||| | || |||| ||| | || ||||| ||||| || || || || Sbjct 37401 AGGAAGAGTAACCAGAAGAACCTTGGTACAATCAAATGCAGCAACCTCTG 37450 >seq863 Length=118355 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGT-TGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || || || || ||||| | || |||| | || || || || ||||| ||||| | Sbjct 78296 ATCTTCTAACTGATTACCTGCAAAGAT-AATCCTCTGTTGATCAGGAGGAATTCCTTCCT 78354 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 | ||||||||||| ||| || || | ||| || || | || ||||| ||||| | Sbjct 78355 TGTCTTGAATTTTAGATTTTATGTTATCAATGGTATCTGATGGTTCAACTTCCAGAGTTA 78414 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || |||| |||||||||||||| Sbjct 78415 TTGTTTTACCGGTAAGTTTTTTCACAAAAATTTGCAT 78451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451881390787640